PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018824.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 386aa MW: 43702.8 Da PI: 6.6701

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018824.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	8e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl PCP018824.1 14 KGPWSPEEDARLKAYIEENGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	33.7	8.4e-11	70	111	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++ Ed ++ + G++ W+ Ia+ ++ gRt++++k++w++ PCP018824.1 70 GFSEKEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 699***************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDARLKAYIE ENGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEKEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGM 120 RKQSNINRSP SDQSQDHQLK DADDAQALSS SALERLQLHM QLQSLQNPFS FYNHPALWPK 180 LHPLQEKMIQ TLRSMNDNNP MMHHHTLTTP LQPAQGQKGN INDVYEQVER TSASILIQEE 240 YAKLCNQKSM DELENPLNGM SSSDTRYHAC ISTSNQVDST IVAAKADNVE QLNSVGTHGP 300 HHQVNLSFHG EFGDTDNNKC VGFTAQQEHD QMAEFDCFKE MNVSKDSLVW WANEFDAKSA 360 SSDSWDSTSI LHSQGVFQDY ELGYNM

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDARLKAYIE ENGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEKEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGM  120
RKQSNINRSP SDQSQDHQLK DADDAQALSS SALERLQLHM QLQSLQNPFS FYNHPALWPK  180
LHPLQEKMIQ TLRSMNDNNP MMHHHTLTTP LQPAQGQKGN INDVYEQVER TSASILIQEE  240
YAKLCNQKSM DELENPLNGM SSSDTRYHAC ISTSNQVDST IVAAKADNVE QLNSVGTHGP  300
HHQVNLSFHG EFGDTDNNKC VGFTAQQEHD QMAEFDCFKE MNVSKDSLVW WANEFDAKSA  360
SSDSWDSTSI LHSQGVFQDY ELGYNM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	7e-98	MYB family protein