PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP018825.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23893.3 Da    PI: 9.7686
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP018825.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.23.8e-171153345
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 i+n+  r+ tf kR++g+lKK +EL +LCd++++ ii++++++
  PCP018825.1 11 IQNDQTRKLTFKKRKKGLLKKMSELTILCDVQACAIIYGKHDT 53
                 99*************************************9765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MTREKVKLAY IQNDQTRKLT FKKRKKGLLK KMSELTILCD VQACAIIYGK HDTQAEVWPS  60
PAGVQRTYMK FKTMPSMEQT KKQLNMETFL RQQIEKAKDQ LRKQKKENHE KEMSIMMSKC  120
LTGRSLQGFN MEDLNDLGWV IDHKVEEINR KMKKVNDELA QNEQSKPCSK NIIATSDQRQ  180
NDEHAASSGS THGDDDPTRP SATSADGGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-43M-type_MADS family protein