PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018923.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 643aa MW: 71999.8 Da PI: 6.0074

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018923.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	8e-05	460	491	18	54
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++++ Lr+++P+ + ++Ka+iL +++Y+k+L PCP018923.1 460 EKLFVLRSMVPSI-----TEVDKASILDDTIKYLKEL 491 67899*****6.....69*************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence
MAQNHERVPE NLRKQFAVAV RSIKWSYAIF WSLSTTQQGV LEWGEGYYNG DIKTRKTVEG 60 VEIKTDKMGL QRNVQLRELY KSLLDGETEA EQQAKAPSAA LSPEDLTDAE WYYLLCMSFV 120 FNPGEGLPGR ALATGQTIWL CNAQHADSKV FSRSLLAKTV VCFPYLGGVV ELGVTELVME 180 DLNLIQHIKA SLLDFSKPDC CEKSSSAPHK ADDDSEQIVA KVDHDVVDTL DLENLYSPSE 240 EIKFHHRGIN DLHGNHEEVN MDSPYGCSNG CDHNHQTEDS MMLEGTNAAS QVQSWHFMDE 300 DFSVQDSMNS SDCISEAFVN QGKAHSSAKC EKANHVNVKE LQNFNDTKLS SLDLGSVDEH 360 VHYKRTLSAL LASSTKLIEN PCFCDGDCKS SFMKWKKGVV GGCRPTVHQK ILKKILFTVP 420 LMSGVRSPRA TGKENTGKNV LPNLQGDDIH REHDQMRESE KLFVLRSMVP SITEVDKASI 480 LDDTIKYLKE LGARAEEMES SMDTVEAIAR RKFLNRVEKT SINYDKTKMD NVKKSLLNKR 540 KACDINETDP YLNRLVPGES LPLDVKVCVK EQEVVIGMRC PYREYILLDI MDAINNLYLD 600 AHSVQSSTLD GVLTLNLKSK FRGAAISPVG MIKQALWKIA GKC

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence

MAQNHERVPE NLRKQFAVAV RSIKWSYAIF WSLSTTQQGV LEWGEGYYNG DIKTRKTVEG  60
VEIKTDKMGL QRNVQLRELY KSLLDGETEA EQQAKAPSAA LSPEDLTDAE WYYLLCMSFV  120
FNPGEGLPGR ALATGQTIWL CNAQHADSKV FSRSLLAKTV VCFPYLGGVV ELGVTELVME  180
DLNLIQHIKA SLLDFSKPDC CEKSSSAPHK ADDDSEQIVA KVDHDVVDTL DLENLYSPSE  240
EIKFHHRGIN DLHGNHEEVN MDSPYGCSNG CDHNHQTEDS MMLEGTNAAS QVQSWHFMDE  300
DFSVQDSMNS SDCISEAFVN QGKAHSSAKC EKANHVNVKE LQNFNDTKLS SLDLGSVDEH  360
VHYKRTLSAL LASSTKLIEN PCFCDGDCKS SFMKWKKGVV GGCRPTVHQK ILKKILFTVP  420
LMSGVRSPRA TGKENTGKNV LPNLQGDDIH REHDQMRESE KLFVLRSMVP SITEVDKASI  480
LDDTIKYLKE LGARAEEMES SMDTVEAIAR RKFLNRVEKT SINYDKTKMD NVKKSLLNKR  540
KACDINETDP YLNRLVPGES LPLDVKVCVK EQEVVIGMRC PYREYILLDI MDAINNLYLD  600
AHSVQSSTLD GVLTLNLKSK FRGAAISPVG MIKQALWKIA GKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-140	bHLH family protein