PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019297.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARR-B

Protein Properties

Length: 680aa MW: 74848.6 Da PI: 4.8033

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019297.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	62	1.1e-19	199	242	1	45
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 kpr++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+gLt+e+ PCP019297.1 199 KPRVVWSRELHQKFVAAVDQL-GYDKAVPKKILDLMNVEGLTREN 242 79*****************.******************986 PP
2	Myb_DNA-binding	26.3	1.7e-08	201	242	1	42
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcks 42 r W+ e+++++v av qlG + +k+I m+ +g+t+ + PCP019297.1 201 RVVWSRELHQKFVAAVDQLGYDkaVPKKILDLMNvEGLTR---EN 242 678********************************99999...44 PP
3	Response_reg	80.5	5.6e-27	13	121	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+ + ++ll+++l k +y +v+++ ++ +al++l+e++ +Dl++ D++mp+mdG++ll+ + e +lp+i+++++++++++ + ++ Ga PCP019297.1 13 VLAVDDNSTCLRLLEELLVKCQY-QVTTTNQAVKALQMLRENRnnFDLVISDVNMPDMDGFKLLELLGLEM-DLPVIMLSGYSDKDLVMKGISHGAC 107 799******************.***********999889*****************96644.8******************** PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + PCP019297.1 108 DYLLKPVRIEELKN 121 *********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MTVEDRFPVG MRVLAVDDNS TCLRLLEELL VKCQYQVTTT NQAVKALQML RENRNNFDLV 60 ISDVNMPDMD GFKLLELLGL EMDLPVIMLS GYSDKDLVMK GISHGACDYL LKPVRIEELK 120 NIWQHVVRRK KFYPEDQNKS SSQDKGCLDA GEGGCAVSPS GSSDRSGRFS RKRKEQNEDE 180 EEEDEEEEHE NEELSYQKKP RVVWSRELHQ KFVAAVDQLG YDKAVPKKIL DLMNVEGLTR 240 ENKFRQYLKK LRNPAFGVRD SSYTRMAALD GFGDAQSLVG SQRFSNAGLS PYIPSMMLGR 300 LNSTAGLSIR GTTSGLVQPG HSQNLSNYFN IPTKLQPVLP ANQSPNVYQT FPASLEFKQS 360 QQSKYITHIG ESSPSNDSTS YAIPSSFPGA RASASSIFSD SNASSNPLIL HGTPQQTHST 420 GAVGNQSSLG VASLNPESFD IGTSSKFLDY NRCSDSWQVA VQLSDFPMNS LPMSEPGHHG 480 ELHANNLGFA SSGPQVATVP SDFSSSVLSA PAVELRGSIL NQVGLIGDVV PTMTCSPRQM 540 WEEHKHDFNH NFNLSFNADN SMVSANVLLG PVSPSLDQND AVCSEKMTSS LFDILDGVTS 600 PVMQPSEFQK SAMETTMNPT EVYSWQQTKS PDDVAQNTYG PWNDVMTAIL KQGQNENVLS 660 MDGDFGFDAC SPGSQQFIPL

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MTVEDRFPVG MRVLAVDDNS TCLRLLEELL VKCQYQVTTT NQAVKALQML RENRNNFDLV  60
ISDVNMPDMD GFKLLELLGL EMDLPVIMLS GYSDKDLVMK GISHGACDYL LKPVRIEELK  120
NIWQHVVRRK KFYPEDQNKS SSQDKGCLDA GEGGCAVSPS GSSDRSGRFS RKRKEQNEDE  180
EEEDEEEEHE NEELSYQKKP RVVWSRELHQ KFVAAVDQLG YDKAVPKKIL DLMNVEGLTR  240
ENKFRQYLKK LRNPAFGVRD SSYTRMAALD GFGDAQSLVG SQRFSNAGLS PYIPSMMLGR  300
LNSTAGLSIR GTTSGLVQPG HSQNLSNYFN IPTKLQPVLP ANQSPNVYQT FPASLEFKQS  360
QQSKYITHIG ESSPSNDSTS YAIPSSFPGA RASASSIFSD SNASSNPLIL HGTPQQTHST  420
GAVGNQSSLG VASLNPESFD IGTSSKFLDY NRCSDSWQVA VQLSDFPMNS LPMSEPGHHG  480
ELHANNLGFA SSGPQVATVP SDFSSSVLSA PAVELRGSIL NQVGLIGDVV PTMTCSPRQM  540
WEEHKHDFNH NFNLSFNADN SMVSANVLLG PVSPSLDQND AVCSEKMTSS LFDILDGVTS  600
PVMQPSEFQK SAMETTMNPT EVYSWQQTKS PDDVAQNTYG PWNDVMTAIL KQGQNENVLS  660
MDGDFGFDAC SPGSQQFIPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-88	ARR-B family protein