PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019308.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 425aa MW: 43946.6 Da PI: 6.649

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019308.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.8e-12	220	265	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq PCP019308.1 220 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 265 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MNSLLNASAS ASQLSLQDHH HLQQQQSHSH SSQMHPQIPN PSASHFDSAT HDDFLEQMLS 60 TLGPSWASAA DDAPPPPSSN PDNVVFSYDD SATLASKFRS QQISAGSGAN KSASASAAAA 120 AAMMLQHQLM MSRSGAADSG FSPMGLSLRN NGDFDRSNSD VGDVSSFKSP NTGGGQLLAQ 180 NYGGAGAAMN QAPAGGSAGA APAQPKPRVR ARRGQATDPH SIAERLRRER IAERMKALQE 240 LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA AVAPLVADMS SEGGGDCIQA 300 SANGGTRGRS SNGNQTASSS NDNSMTVTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA 360 TAISTATCHS RNPLLQNSNN NPVIPSNGGD GPSSPSMSVL TVQSATMGNG GVEGSVKDAT 420 SVSKP

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MNSLLNASAS ASQLSLQDHH HLQQQQSHSH SSQMHPQIPN PSASHFDSAT HDDFLEQMLS  60
TLGPSWASAA DDAPPPPSSN PDNVVFSYDD SATLASKFRS QQISAGSGAN KSASASAAAA  120
AAMMLQHQLM MSRSGAADSG FSPMGLSLRN NGDFDRSNSD VGDVSSFKSP NTGGGQLLAQ  180
NYGGAGAAMN QAPAGGSAGA APAQPKPRVR ARRGQATDPH SIAERLRRER IAERMKALQE  240
LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA AVAPLVADMS SEGGGDCIQA  300
SANGGTRGRS SNGNQTASSS NDNSMTVTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA  360
TAISTATCHS RNPLLQNSNN NPVIPSNGGD GPSSPSMSVL TVQSATMGNG GVEGSVKDAT  420
SVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	230	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-64	bHLH family protein