PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019418.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 243aa MW: 27687.8 Da PI: 4.6059

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019418.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.8e-19	36	89	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++eq++ Le+ Fe+++ + +++ +LAk+lgL+ +qV +WFqN+Ra++k PCP019418.1 36 NNKRFSDEQIRSLESIFESESRLEPRKKMQLAKELGLQPKQVAIWFQNKRARWK 89 5568*************************************************9 PP
2	HD-ZIP_I/II	118.9	2.8e-38	36	127	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + +r+s+eq+++LE+ Fe+e++Lep++K++la+eLglqp+qva+WFqn+RAR+k+kqlE+dy++L+++y++l+++ e+L+ke+++L ++++ PCP019418.1 36 NNKRFSDEQIRSLESIFESESRLEPRKKMQLAKELGLQPKQVAIWFQNKRARWKSKQLERDYSKLRANYNNLASKFEALKKEKQALVVQVQK 127 579***********************************************************************************999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MLDKIEYSSP SAEDHETFSC MSPLGAATTR RKNNKNNKRF SDEQIRSLES IFESESRLEP 60 RKKMQLAKEL GLQPKQVAIW FQNKRARWKS KQLERDYSKL RANYNNLASK FEALKKEKQA 120 LVVQVQKLNN LMMMQRENCG EDVVMNNGID GESDNGDATI SESDKVKLDF SVEKSEQGGL 180 GVLSDDDSRI KAEYFGLEDE PDLANLVESA DGSLTSAEDW GKLNSDGLFD VTSGDYQWWD 240 FWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-65	HD-ZIP family protein