PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019614.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 712aa MW: 76094.6 Da PI: 6.4652

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019614.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50	5.4e-16	460	506	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq PCP019614.1 460 VHNLSERKRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 506 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence
MPLSELYRMA GRVDSSQDFE NDFLELVWEN GQVMMQGQSS RTRKNPSFNS LPSFNNPKNR 60 DRDVGNGNIG KTGKFGSVVD SGLDEIPLSV PSSEMGLSED DDMLPWLNYS IDEPLHHEYC 120 HDFLPEFSSA TANEASTNHN LASIDKRSSS SQVFRDSNSN SAHEGACLQQ GNVGKVPLNG 180 GADVSRPRSG ATQLYSLSSQ RSQASFPSFR SRVSDTAGDN TSSATHRGVG KNSTQISSAG 240 GSPGIKIPRP DPVKPSNNNP SIVNFSHFSR PAALAKANVQ TNGVMAGSGS SSMIRIANKD 300 KFSAATSSNL PESMLIDSSI STPKESNSQC QQILVRSSVE LKPTEAKPLE EPCTAKRSEG 360 TCQEETSKND INSNHIPCES AVRVSSNGEK TVEPVVASSV CSGNSVERGS DDPTQALKRK 420 FRETDESECH SDDVEEEYMG VKKGAHARGM GSKRSRAAEV HNLSERKRRD RINEKMRALQ 480 ELIPNCNKVD KASMLDEAIE YLKTLQLQLQ MMSMGAGMYM PPMMLPPGMQ HMHGPCMAHF 540 SPMGVGMGMG LGMGFGMGMP DMIGASSSYP MLQVPPMQGA HFPGSHMAGH TTFNGMMGSN 600 LQMFGLPSQG VPVPMQRAPL APSSAGPFVK SSAGPNAGSS GGPVENVESA PVSGSKDSVQ 660 NMNSQAMQNS NANSSMNQTS SQGQATNEGF AQSALVRNNV QATDVNNNRA DG

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence

MPLSELYRMA GRVDSSQDFE NDFLELVWEN GQVMMQGQSS RTRKNPSFNS LPSFNNPKNR  60
DRDVGNGNIG KTGKFGSVVD SGLDEIPLSV PSSEMGLSED DDMLPWLNYS IDEPLHHEYC  120
HDFLPEFSSA TANEASTNHN LASIDKRSSS SQVFRDSNSN SAHEGACLQQ GNVGKVPLNG  180
GADVSRPRSG ATQLYSLSSQ RSQASFPSFR SRVSDTAGDN TSSATHRGVG KNSTQISSAG  240
GSPGIKIPRP DPVKPSNNNP SIVNFSHFSR PAALAKANVQ TNGVMAGSGS SSMIRIANKD  300
KFSAATSSNL PESMLIDSSI STPKESNSQC QQILVRSSVE LKPTEAKPLE EPCTAKRSEG  360
TCQEETSKND INSNHIPCES AVRVSSNGEK TVEPVVASSV CSGNSVERGS DDPTQALKRK  420
FRETDESECH SDDVEEEYMG VKKGAHARGM GSKRSRAAEV HNLSERKRRD RINEKMRALQ  480
ELIPNCNKVD KASMLDEAIE YLKTLQLQLQ MMSMGAGMYM PPMMLPPGMQ HMHGPCMAHF  540
SPMGVGMGMG LGMGFGMGMP DMIGASSSYP MLQVPPMQGA HFPGSHMAGH TTFNGMMGSN  600
LQMFGLPSQG VPVPMQRAPL APSSAGPFVK SSAGPNAGSS GGPVENVESA PVSGSKDSVQ  660
NMNSQAMQNS NANSSMNQTS SQGQATNEGF AQSALVRNNV QATDVNNNRA DG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	465	470	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-46	bHLH family protein