PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019714.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 677aa MW: 75780.8 Da PI: 7.3125

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019714.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	52	2e-16	318	362	4	48
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 Ck+lrr+C++dC+++ yfp ++p++fa vh+++Gasnv+k+l+ PCP019714.1 318 TCKYLRRRCPSDCIFSSYFPPNNPQRFASVHRIYGASNVSKMLQF 362 6*****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence
MYADASRDSE TGGQQLRSNV FSLSGTGFFG AIGRAQTWLE RAWNSLNWDE KLSLVSSVVR 60 GITSPSDISK KSLNDELEMA SFQAMDATDS AEFRQSSSNS KPSFADTINI LVVDDDATTL 120 TIVSAMLKTW NYKVVPVKNP IDALATLREQ KGAFDLVVTD LHMPEMDGFE LQKHVRDEFK 180 LPVIMMSADD NESVILKSLE GGVAYYIVKP VSKDDIKNVW QYAVAAKKGK SVVIGEIEGA 240 PREAPGEVDD GSNSEISSDT NEEQHKKKAE VKTKKAKKRG REDDNEERML APKKPKVVWI 300 NSLHYQFLLA IRHIGLDTCK YLRRRCPSDC IFSSYFPPNN PQRFASVHRI YGASNVSKML 360 QFRFMNNQIH CLSAAMAIRP SLPHLHQRLG GSQNPNFPID LQNHNIPTKS IISMLFIGRL 420 SGRVPRHRLR QHHLLLHPPW PRHGNGTHLR QAFGAKKHSA RPLFAEDGPP PTIYILTNFS 480 SLAEHEENPS HLRPGRSDRE AQLYLLCSLP DLLAQSFLHL LRIYLRSQSI TLPLTLCAAL 540 AIISSTFPST IFSFCTSIWE SKLLLLVRVA HNERQSDGLT SEVNSQRVEK RLSEKIRERT 600 EEVQLSFGSD RFVLAADEDD FLHVQPGKRN GLAADEFHSH GEAGEYVVTG DVGEAHGKGP 660 VRYGELTKAA EEEHGDD

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence

MYADASRDSE TGGQQLRSNV FSLSGTGFFG AIGRAQTWLE RAWNSLNWDE KLSLVSSVVR  60
GITSPSDISK KSLNDELEMA SFQAMDATDS AEFRQSSSNS KPSFADTINI LVVDDDATTL  120
TIVSAMLKTW NYKVVPVKNP IDALATLREQ KGAFDLVVTD LHMPEMDGFE LQKHVRDEFK  180
LPVIMMSADD NESVILKSLE GGVAYYIVKP VSKDDIKNVW QYAVAAKKGK SVVIGEIEGA  240
PREAPGEVDD GSNSEISSDT NEEQHKKKAE VKTKKAKKRG REDDNEERML APKKPKVVWI  300
NSLHYQFLLA IRHIGLDTCK YLRRRCPSDC IFSSYFPPNN PQRFASVHRI YGASNVSKML  360
QFRFMNNQIH CLSAAMAIRP SLPHLHQRLG GSQNPNFPID LQNHNIPTKS IISMLFIGRL  420
SGRVPRHRLR QHHLLLHPPW PRHGNGTHLR QAFGAKKHSA RPLFAEDGPP PTIYILTNFS  480
SLAEHEENPS HLRPGRSDRE AQLYLLCSLP DLLAQSFLHL LRIYLRSQSI TLPLTLCAAL  540
AIISSTFPST IFSFCTSIWE SKLLLLVRVA HNERQSDGLT SEVNSQRVEK RLSEKIRERT  600
EEVQLSFGSD RFVLAADEDD FLHVQPGKRN GLAADEFHSH GEAGEYVVTG DVGEAHGKGP  660
VRYGELTKAA EEEHGDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-40	ARR-B family protein