PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019868.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 489aa MW: 53495.2 Da PI: 5.512

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019868.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.1	1.1e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde l+++++ G g+W+ ++ g+ R++k+c++rw +yl PCP019868.1 14 KGRWTAEEDEMLLNYIQANGEGSWRCLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	47.3	4.7e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E+++++++++ lG++ W++Ia ++ gRt++++k++w+++l PCP019868.1 67 RGNISSQEEDIIIKLHASLGNR-WSLIAGQLP-GRTDNEIKNYWNSHL 112 78999***************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MGRAPCCEKV GLKKGRWTAE EDEMLLNYIQ ANGEGSWRCL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SSQEEDIIIK LHASLGNRWS LIAGQLPGRT DNEIKNYWNS HLSRKIGTFR 120 RPATTTAITT EISTSSPLAG DQVSAAMELG PPKRRGGRTS RWAMKKNKTY STTKPKGLKA 180 RLRQSHHKHD NIAAAADDDD RLNNAHEAIA LPTKSNNKNV DTMQDGYVLP MGVPDQQQET 240 RGGGTAMPAT VIDHQKETDG EKLILGPHPH VHGDDDMNEY VGINGGLLGF TDYLMDDINE 300 DEILDPNGAM ALSSSEINIH QDADHFPNAV ISDHQDTELP SSCDQLVISP NKVMKMTTTT 360 TTTTAVSDDH HDQELESSSC GCNLSSTSSI SNSNGKVVTG DLHSCGSSLS LTNTINCDTE 420 DGHTAGGFGN HDQILWDWES VLSNAGTGHD YLWDGHDRQN MLSWLREGES ATAVGDDDHA 480 DAMVAWLLS

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MGRAPCCEKV GLKKGRWTAE EDEMLLNYIQ ANGEGSWRCL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SSQEEDIIIK LHASLGNRWS LIAGQLPGRT DNEIKNYWNS HLSRKIGTFR  120
RPATTTAITT EISTSSPLAG DQVSAAMELG PPKRRGGRTS RWAMKKNKTY STTKPKGLKA  180
RLRQSHHKHD NIAAAADDDD RLNNAHEAIA LPTKSNNKNV DTMQDGYVLP MGVPDQQQET  240
RGGGTAMPAT VIDHQKETDG EKLILGPHPH VHGDDDMNEY VGINGGLLGF TDYLMDDINE  300
DEILDPNGAM ALSSSEINIH QDADHFPNAV ISDHQDTELP SSCDQLVISP NKVMKMTTTT  360
TTTTAVSDDH HDQELESSSC GCNLSSTSSI SNSNGKVVTG DLHSCGSSLS LTNTINCDTE  420
DGHTAGGFGN HDQILWDWES VLSNAGTGHD YLWDGHDRQN MLSWLREGES ATAVGDDDHA  480
DAMVAWLLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	5e-72	MYB family protein