PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019914.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 521aa MW: 57011.4 Da PI: 8.4819

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019914.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	338	385	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq PCP019914.1 338 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 385 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MENDFFLNAG IPSPLLLEQA SSMPAWRSSF STAVDIQTAA TDRNCSLEQS PDCFYNPNWD 60 NKSTDQNIHF KSALSSMVSS PAASNSNISN ESFVIRELIG KARKHRKLQR SLATFPVVAG 120 NSKFLHGLAD FSADPGFAER AAKFSCFGSR SFNGRTSQLG TNNNNSTEQP PFRSHPAAGN 180 GGKLPRVSSS SSIMALGSQT SMQEKMRALL QDRSELPNSR EESTISEQKP NGETNSMDMN 240 SRKRKSASKG KAKDHHPPPI SPSPTSTKGA EVNENSNAKR SKPSENNGND QNGSVKAEED 300 AKGSTSSDEK QTKTGPKPPE PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL 360 VPGCNKVTGK ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMETLM SKEIFQQNNG 420 LPQHPIFPSD SSAQAIYGHQ RQQNPALSNG AVDPLDNTSP CQSLGMQLPP LSGFSSEGIP 480 QFPAFGEDDL HTIVQMGFGQ NPTRESELLG SNQVSHMKIE L

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MENDFFLNAG IPSPLLLEQA SSMPAWRSSF STAVDIQTAA TDRNCSLEQS PDCFYNPNWD  60
NKSTDQNIHF KSALSSMVSS PAASNSNISN ESFVIRELIG KARKHRKLQR SLATFPVVAG  120
NSKFLHGLAD FSADPGFAER AAKFSCFGSR SFNGRTSQLG TNNNNSTEQP PFRSHPAAGN  180
GGKLPRVSSS SSIMALGSQT SMQEKMRALL QDRSELPNSR EESTISEQKP NGETNSMDMN  240
SRKRKSASKG KAKDHHPPPI SPSPTSTKGA EVNENSNAKR SKPSENNGND QNGSVKAEED  300
AKGSTSSDEK QTKTGPKPPE PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL  360
VPGCNKVTGK ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMETLM SKEIFQQNNG  420
LPQHPIFPSD SSAQAIYGHQ RQQNPALSNG AVDPLDNTSP CQSLGMQLPP LSGFSSEGIP  480
QFPAFGEDDL HTIVQMGFGQ NPTRESELLG SNQVSHMKIE L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	246	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-97	bHLH family protein