PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020055.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 249aa MW: 28519.2 Da PI: 7.1962

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020055.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.1	8.5e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s PCP020055.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59 79***********************************************96 PP
2	K-box	100.8	1.9e-33	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 l ++++++++q++ Lk+++e Lq++qR+llGedL++L+ keL++Le+qLe+slk+iRs+K++++l+q+++lq++e++l e+nk+L++klee PCP020055.1 82 LPANETQNSYQDYLTLKARVEVLQQSQRNLLGEDLQPLNTKELEHLEHQLETSLKQIRSRKTQFILDQLSDLQNREQMLVEANKSLKRKLEE 173 77899************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCSS 60 FSMMKTLEKY QSCSYGSLEA NLPANETQNS YQDYLTLKAR VEVLQQSQRN LLGEDLQPLN 120 TKELEHLEHQ LETSLKQIRS RKTQFILDQL SDLQNREQML VEANKSLKRK LEETSVQAPE 180 GMAWEAAGHD HNYNIQQTRL PSHSEAFFHP LEGNNSSSQI GYTHMGSDNE MNVGNPGQYV 240 NGFIPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-100	MIKC_MADS family protein