PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020069.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 363aa MW: 40914.2 Da PI: 7.5606

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020069.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.4	1.5e-12	48	104	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa+a++ a++k++g PCP020069.1 48 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAARAYDLAALKYWG 104 57*****************99998898888888******************98 PP
2	AP2	51.4	2.8e-16	147	198	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg+f t eeAa a++ a+ +++g PCP020069.1 147 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFATQEEAATAYDMAAIEYRG 198 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MAKTSQQNQK NTAGSTNRSS STTSTVTTTK VKRTRKSVRR DSPPQRSSIY RGVTRHRWTG 60 RYEAHLWDKN CWNESQNKKG RQGAYDDEEA AARAYDLAAL KYWGRDTILN FPVSTYEEEL 120 KEMESQSKEE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTFA 180 TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKSLCPNTTN EPNDDQQNPN GDLYEMQNPD 240 GVLNQMHNPN GKPELGIMPD HTSSSSTSDS SVVLPRTGNG SSASSALGLL LQSPKFKEML 300 ERSSVKECSP TLSEPEIRRR IFPDDIQTYF DCQDLNSIAE GDDIIFGELQ PFASPVFHCE 360 LDA

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MAKTSQQNQK NTAGSTNRSS STTSTVTTTK VKRTRKSVRR DSPPQRSSIY RGVTRHRWTG  60
RYEAHLWDKN CWNESQNKKG RQGAYDDEEA AARAYDLAAL KYWGRDTILN FPVSTYEEEL  120
KEMESQSKEE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTFA  180
TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKSLCPNTTN EPNDDQQNPN GDLYEMQNPD  240
GVLNQMHNPN GKPELGIMPD HTSSSSTSDS SVVLPRTGNG SSASSALGLL LQSPKFKEML  300
ERSSVKECSP TLSEPEIRRR IFPDDIQTYF DCQDLNSIAE GDDIIFGELQ PFASPVFHCE  360
LDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-104	AP2 family protein