PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020291.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 325aa MW: 36346.8 Da PI: 6.3762

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020291.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.4	5.4e-13	116	167	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N ++ Lr+++P + ++++ + a+i A++++k+L+ PCP020291.1 116 QRMTHIAVERNRRKQMNVYLAVLRSMMPAP---YAQRGDQASIIGGAINFVKELE 167 79**************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MTLEAVVFQE EQYSYGWKDS QAIGGGGGGG GSWSHGFDFG EEDHQEESNE VVQQGFNMSL 60 DSSTSSMVQS VNDCDTNNGS AFNHVFPSIE ALVATTGRKK RKRIRSIKNK EVMETQRMTH 120 IAVERNRRKQ MNVYLAVLRS MMPAPYAQRG DQASIIGGAI NFVKELEQLL QSIEGQRRTK 180 QQSDHHLNFA SIFSSFFVFP QYSTCSTNHG HGLYNNSSIE LSNELTAEKR SSAIADVEVS 240 MAESHANIKV LVKKQPRQLL NMVLGLHSLR LMILHLNVTT VDSMIFYSFS VKIEDNSQLT 300 SVNEIAADVY EMVGRIQEEA QHLAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	103	RKKRKR
2	117	128	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	2e-70	bHLH family protein