PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP020530.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 139aa    MW: 16427 Da    PI: 7.3386
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP020530.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS105.76.6e-338136245373
         GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                  +a++n++ F++rf eal +ysal+d+++ k+pr++eer + E e+ gre++nv+aceg er+er et+++W+ r ++aG++ +pl+++ +k  k  ++
  PCP020530.1   8 NASYNAPFFVTRFREALFHYSALYDAFDIKIPRDNEERLMFESEFYGREAMNVIACEGVERVERPETYKQWQVRCMRAGLQLLPLDQDLVKIFKDKVK 105
                  7899********************************************************************************************** PP

         GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    + + y ++++s+++++g k+r +++ S+W
  PCP020530.1 106 AWYHKDYVIDQDSAWMLQGLKGRIVYASSCW 136
                  ***888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MKPLSIINAS YNAPFFVTRF REALFHYSAL YDAFDIKIPR DNEERLMFES EFYGREAMNV  60
IACEGVERVE RPETYKQWQV RCMRAGLQLL PLDQDLVKIF KDKVKAWYHK DYVIDQDSAW  120
MLQGLKGRIV YASSCWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.12e-64GRAS family protein