PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020546.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 542aa MW: 59846.2 Da PI: 5.9823

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020546.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1e-16	97	141	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ PCP020546.1 97 RERWTEEEHKKFLEALKLYGRA-WRKIEEHIG-TKTAVQIRSHAQKF 141 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MIIFLLYERG EDRDKDLLRF LQAEGVRRNG VVTGRAEEEV NFAWWEQFGS SGSNGVDSAG 60 TGISPSAGGV QFKDDQFSSG NDFTPKVRKP YTIKKERERW TEEEHKKFLE ALKLYGRAWR 120 KIEEHIGTKT AVQIRSHAQK FFSKVARYPN GGNATSEEPI DIPPPRPKKK PMRPYPRKLV 180 HPLDKETSIG EQPTRSPSPN LSVSEQENQS PTSVLSVIGS DALGSTDSNT PSDGLSPDSS 240 AAGVNSENLI HSEPNPLLEE SGSPINNCSL PNKQLTMKLE LFPTDDVDAS GGSAKEAFAR 300 SLKLFGRTVL VTDSHRPSSR AAGTSQSLPS DVQEEKPVQT SLPFNFTDME SASGNVEHVW 360 DNFPYGGHQG IYFMQFQNQN SDAVESGTNA YPVPWWTVCP PFIPFHKQQQ QPVNEHVDSK 420 KVDGEGSCTG SDAGSASDEE NRDKDDETQG DHYQQVSDKD GEPNSVLQFK ASANSAFSKI 480 RASTGKYRKG FVPYKRCMAE RDAKSSTVAS EDGDGKRICL SLWRPPVLVK TQEALPLFHR 540 TS

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MIIFLLYERG EDRDKDLLRF LQAEGVRRNG VVTGRAEEEV NFAWWEQFGS SGSNGVDSAG  60
TGISPSAGGV QFKDDQFSSG NDFTPKVRKP YTIKKERERW TEEEHKKFLE ALKLYGRAWR  120
KIEEHIGTKT AVQIRSHAQK FFSKVARYPN GGNATSEEPI DIPPPRPKKK PMRPYPRKLV  180
HPLDKETSIG EQPTRSPSPN LSVSEQENQS PTSVLSVIGS DALGSTDSNT PSDGLSPDSS  240
AAGVNSENLI HSEPNPLLEE SGSPINNCSL PNKQLTMKLE LFPTDDVDAS GGSAKEAFAR  300
SLKLFGRTVL VTDSHRPSSR AAGTSQSLPS DVQEEKPVQT SLPFNFTDME SASGNVEHVW  360
DNFPYGGHQG IYFMQFQNQN SDAVESGTNA YPVPWWTVCP PFIPFHKQQQ QPVNEHVDSK  420
KVDGEGSCTG SDAGSASDEE NRDKDDETQG DHYQQVSDKD GEPNSVLQFK ASANSAFSKI  480
RASTGKYRKG FVPYKRCMAE RDAKSSTVAS EDGDGKRICL SLWRPPVLVK TQEALPLFHR  540
TS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	3e-68	MYB_related family protein