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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PCP020549.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 274aa MW: 31003.3 Da PI: 5.6086 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 59.8 | 4.5e-19 | 55 | 108 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq+++Le+ F ++++ e++ +LA++lgL+ rqV +WFqNrRa++k
PCP020549.1 55 KKRRLNSEQVKALERNFDVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 108
456899***********************************************9 PP
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| 2 | HD-ZIP_I/II | 128.3 | 3.3e-41 | 55 | 146 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
kkrrl++eqvk+LE++F+ e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk+ yd lk + ++Le+++++L+e+l++
PCP020549.1 55 KKRRLNSEQVKALERNFDVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYSILKTDYDGLKLNFDSLERQNKALAEKLSQ 146
9**************************************************************************************99976 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 274 aa Download sequence |
MKRFSSSDSL GALVSNFPSK EEGKLAKDSY GYSKELQAML DSLNQEDVGE EMSGKKRRLN 60 SEQVKALERN FDVENKLEPE RKVKLAEELG LQPRQVAIWF QNRRARWKTK QLERDYSILK 120 TDYDGLKLNF DSLERQNKAL AEKLSQLKAK LYGESAQRND SVKEESPSST CKSSENLEVD 180 LIKNLKSKDG SSDSDSNGVL TKEESNGNSS LGFNNNRNSI SSNSMVNWFQ LSDSRSVGGK 240 GFQAQTVRME EQSFFSTDES CNFFSVDQAP SLHW |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 55 | 84 | KKRRLNSEQVKALERNFDVENKLEPERKVK |
| 2 | 103 | 111 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G40060.1 | 2e-57 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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