PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP020715.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 218aa    MW: 24348.3 Da    PI: 4.39
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP020715.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.41.2e-3871071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++C++apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdPvyG+v+ i++lqqq++ l++e+++l
  PCP020715.1   7 SCGACKFLRRKCTSECIFAPYFCYDQaADHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITMSYEALARMRDPVYGCVSQIFALQQQVAYLQEEIETL 104
                  6************************9789******************************************************************999 PP

       DUF260  98 kee 100
                  +++
  PCP020715.1 105 GSQ 107
                  876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MAGLGSSCGA CKFLRRKCTS ECIFAPYFCY DQAADHFAAV HKVFGASNVS KLLLHLPVQN  60
RSDAAITMSY EALARMRDPV YGCVSQIFAL QQQVAYLQEE IETLGSQMVD FATCHPSNSN  120
TFVDQLQVFS QHDAVDTQHI QNQLPESPIF PHIGSAAANQ GFNGEMDIEM PPLQEWEEVN  180
LIGDHSTPDP LKRFLESMEQ DNLGNNPWPN ETATWDLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.13e-59LBD family protein