PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020983.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 215aa MW: 24746.9 Da PI: 6.5273

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020983.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.3	1.4e-19	60	113	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ PCP020983.1 60 KRKLTAEQVDLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKN 113 5689************************************************95 PP
2	HD-ZIP_I/II	114.7	5.7e-37	59	150	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+l++eqv lLE +F +e+kLe+e+K +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk++ + ++e++rLe+e+++L+++l+e PCP020983.1 59 KKRKLTAEQVDLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKENEITVAEKCRLESEMSKLKDQLSE 150 9****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MTTNSHQIVE DDHQMLLISH LYSASDVYTQ IVPPQGASKP ARRRRRKSKG GEAGGVGLKK 60 RKLTAEQVDL LELNFGNEHK LESEKKDRLA SELGLDPRQV AVWFQNRRAR WKNKKLEEEY 120 STLKKENEIT VAEKCRLESE MSKLKDQLSE AEKEIQRLSQ RVDHGGSSNS PSSSLSMEAI 180 DPPFLGEFGV EEYDDVFYMP QNNYIHGMEW MNLYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	61	RRRRRKSKGGEAGGVGLKKR
2	42	62	RRRRRKSKGGEAGGVGLKKRK
3	43	62	RRRRRKSKGGEAGGVGLKKR
4	43	63	RRRRRKSKGGEAGGVGLKKRK
5	44	49	RRRKSK
6	44	64	RRRRRKSKGGEAGGVGLKKRK
7	45	65	RRRRRKSKGGEAGGVGLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-69	HD-ZIP family protein