PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP021052.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 169aa    MW: 19485.1 Da    PI: 7.6271
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP021052.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.67.5e-171669356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++ ++t++q++ Le  F++n+++  e++  LAk+l ++ rqV +W+qN+Ra++k
  PCP021052.1 16 SKKRLTQDQVKLLEISFASNNKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWK 69
                 56789************************************************9 PP
2HD-ZIP_I/II107.59.8e-3516107293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   k+rl+++qvklLE sF +++kLeperK  la++L + prqva+W+qn+RAR+kt+ lE dy+a+++++++  +e+ rLek+ve+Lr elk+
  PCP021052.1  16 SKKRLTQDQVKLLEISFASNNKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWKTQSLEFDYSAIQAKLESTLAEKMRLEKDVERLRGELKK 107
                  59**************************************************************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MDFFHTSNHK NQFKHSKKRL TQDQVKLLEI SFASNNKLEP ERKLLLAKQL AIPPRQVAIW  60
YQNKRARWKT QSLEFDYSAI QAKLESTLAE KMRLEKDVER LRGELKKAHE IALALNQQSQ  120
VFPDNPVICS VFDSSNCSDE GVGSSSLQPH EDDEVKQLEE LYASLIGMQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-37HD-ZIP family protein