PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP021103.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 194aa    MW: 21314 Da    PI: 6.7587
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP021103.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.74e-3871071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC ++C++apyf++eq + +fa++hk+FGasnv kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la++
  PCP021103.1   7 PCGACKFLRRKCIRGCIFAPYFCHEQgATHFAAIHKVFGASNVAKLLAQLPLSDRCRAALTISYEAQARVQDPIYGCVSHIFSLQQQVLSLEAQLASV 104
                  7*************************89*********************************************************************9 PP

       DUF260  98 kee 100
                  ke+
  PCP021103.1 105 KEQ 107
                  987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MTGSGSPCGA CKFLRRKCIR GCIFAPYFCH EQGATHFAAI HKVFGASNVA KLLAQLPLSD  60
RCRAALTISY EAQARVQDPI YGCVSHIFSL QQQVLSLEAQ LASVKEQAAK GYSSSNFQGW  120
HQSENSNILM PQSVINESVT PLYSGNKNPN SFGSNANFMI PEVLDDMYGD PSNSMCSLDM  180
QMSNRSWGFD QDHD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-62LBD family protein