PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP021152.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24600.5 Da    PI: 9.4276
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP021152.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF466.8e-151052244
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 +ien+s r+ tf kRr+g +KK +E+  LCd+  + i++s+++
  PCP021152.1 10 FIENDSSRKATFRKRRTGFMKKMYEINKLCDVPTCAIMYSPDQ 52
                 8***************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MTKRKLKLAF IENDSSRKAT FRKRRTGFMK KMYEINKLCD VPTCAIMYSP DQPQPDVWPD  60
PSEVRRLIEL FKNVPEKERN KKMVTHGMFL KQRIEKEQEK LNKLKKDNRE KELRMAMSQC  120
LAGKPLNGLD FTNLQEMGWM IDEKLKDIAV TKCRKENELA EINQPLVGQP PAHATSADEN  180
TQDAIQLAPW SVGGVRSSKF GEVDDQIMPL GDY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325KRKLKLAFIENDSSRKATFRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-30M-type_MADS family protein