PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP021153.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 225aa    MW: 26147.5 Da    PI: 9.3571
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP021153.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.34.1e-131251342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i n+  r+ ++ kR++g  KK +E+S+LCd+ v+ i++s+
  PCP021153.1 12 IINDACRKASYNKRKKGFVKKMKEISILCDVPVCGILYSQ 51
                 668999********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MAGRKKVKLA YIINDACRKA SYNKRKKGFV KKMKEISILC DVPVCGILYS QYESQPIVWP  60
NPLEVQRLIT QFRNMPEEER NKKMVNHEMF LKQRIEKEQE KLNKLKKENR EKQIRMLMNQ  120
CLAGRPLTDL NLDALNDLDC MIKGSLTEIV TQIKSRKEKE LGEMNQPQVA PPQVLAATTD  180
QNMHAAMETQ VFDQSNIYTK QTVPWFLGDV PYQQFGFADD QIPPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-29M-type_MADS family protein