PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021225.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 478aa MW: 53427.4 Da PI: 7.1292

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021225.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.3	6.4e-36	46	188	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........sgy 82 lp+G++F+Ptd+el+ e+L++kve+k+ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ + + PCP021225.1 46 LPAGVKFDPTDQELI-EHLEAKVEAKNskshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggETR 141 799**********.99**9996665443333333666646******.555666799**************73334555544778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l PCP021225.1 142 WHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 188 ********.999*******5547999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MNKSNLGSIR SSDLIDAKLE EHQMCGSKQC PGCGHKLEGK PDWLGLPAGV KFDPTDQELI 60 EHLEAKVEAK NSKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSRH FFHRPSKAYT 120 TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN 180 WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRAS ATTGEGSSDI MATNSRRDSG 240 SGSSSSKEIL PSHPHRDHDQ MAATAAAAVA AAAPISSYSG IDIHQLKHGS EFVHGGVHLQ 300 VGIGGEASTA REGLASGTCE EIREHHQRSV PVQPHHHHHH HISHELVSDH HEQQQQLHHH 360 QQIATAAAFH ISRPSHPIST IISPPPLHHT SIILDQDSYS RLMLQNENFQ AQQQQQHPHH 420 QQHHKMGARS ASGLEELIMG CTSSSSDIKE ESSMPNPQEA EWMKYSFWPD PDNPDHHG

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MNKSNLGSIR SSDLIDAKLE EHQMCGSKQC PGCGHKLEGK PDWLGLPAGV KFDPTDQELI  60
EHLEAKVEAK NSKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSRH FFHRPSKAYT  120
TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN  180
WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRAS ATTGEGSSDI MATNSRRDSG  240
SGSSSSKEIL PSHPHRDHDQ MAATAAAAVA AAAPISSYSG IDIHQLKHGS EFVHGGVHLQ  300
VGIGGEASTA REGLASGTCE EIREHHQRSV PVQPHHHHHH HISHELVSDH HEQQQQLHHH  360
QQIATAAAFH ISRPSHPIST IISPPPLHHT SIILDQDSYS RLMLQNENFQ AQQQQQHPHH  420
QQHHKMGARS ASGLEELIMG CTSSSSDIKE ESSMPNPQEA EWMKYSFWPD PDNPDHHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-144	NAC family protein