PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP021351.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 237aa    MW: 26675.5 Da    PI: 8.5558
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP021351.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.71.4e-36511511100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  aCaaCk++r+kC++dC+la +fpa++p++f+n+h+l+G+sn+  +lk++ ++++++dam+s+v+e+++ra+ Pv G++g+i++l+ ql+++  el ++
  PCP021351.1  51 ACAACKHQRKKCTRDCPLAAHFPASKPETFRNAHRLYGVSNIKTILKQIhEPQQKTDAMQSIVFESDMRAKFPVTGCLGIINQLNFQLQEAMRELYHA 148
                  7************************************************666779*************************************999888 PP

       DUF260  98 kee 100
                  +++
  PCP021351.1 149 RTH 151
                  765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MKPARYSITS AAAVLFTLYL CIVLIPASVF ERTFFGFPTM PAKGGGSAGQ ACAACKHQRK  60
KCTRDCPLAA HFPASKPETF RNAHRLYGVS NIKTILKQIH EPQQKTDAMQ SIVFESDMRA  120
KFPVTGCLGI INQLNFQLQE AMRELYHART HLAVVCKDQL LQDHANRRIA DNVHGQDDDL  180
YYRNLVKPTA LMPVQVQQPY NFVPPAQAFS IRAEQETDAP AAPNYQCYHD LDSNDRY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.19e-24LBD family protein