PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021413.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 183aa MW: 21173.3 Da PI: 10.7784

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021413.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.9	1.3e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n + r+vtfskRrng+lKKA+ELS+LCdaevavi+fs++gk ye++s PCP021413.1 9 KRIDNRTSRHVTFSKRRNGLLKKAFELSILCDAEVAVIVFSHSGKAYEFAS 59 79***********************************************86 PP
2	K-box	69	1.5e-23	84	171	9	96
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ ++e++++e + L++ i+nL+ +++l Ge+L++L ++eL+qLe+qL++++++iRsk +++ e+++ l++k kelqeenk+L k PCP021413.1 84 RSAGTMEYWRNETEELRRTIQNLEMRLKNLAGEELSTLGMQELKQLERQLKTGVERIRSKSRQIISENVNLLKRKHKELQEENKRLLK 171 566779******************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MGRGKVELKR IDNRTSRHVT FSKRRNGLLK KAFELSILCD AEVAVIVFSH SGKAYEFASH 60 DINRTIAMYR REVGLPESNN STFRSAGTME YWRNETEELR RTIQNLEMRL KNLAGEELST 120 LGMQELKQLE RQLKTGVERI RSKSRQIISE NVNLLKRKHK ELQEENKRLL KRGYVLAATP 180 AAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	4e-47	MIKC_MADS family protein