PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021479.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 598aa MW: 68076 Da PI: 6.3959

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021479.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	33.7	1.1e-10	32	168	8	128
NAM 8 hPtdeelvveyLkkkvegkkleleev...ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...........tksgyWkatgkdke 91 +P+d+el+ ++L++ +++++ + + i+ + ++ P++L + + +++y ++ ++ + + r g W ++ ++++ PCP021479.1 32 EPSDQELILYFLNRWIHSQPQPS-QLvaqIDVDEFRSLTPEQLCN----DLQQLYLYTAIERGPGCHDLPDRRvyigqdpldrnRILGWWISKVSKEN 124 6****************9666.33022555567788963....446788888888877766655553366666665544479******** PP NAM 92 vlsk..kgel......vglkktLvfykg.rapkgektdWvmheyrl 128 +l + + +g kk v++ g ++++++ t+W m ey+ PCP021479.1 125 ILGIstD--DpelqisIGYKKPYVYHIGnKRKDAVGTHWHMIEYTT 168 987441..2455666*******7746677899******86 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MSAPPPDVPE HLVRDGDMHQ LLNDIRDRVI DEPSDQELIL YFLNRWIHSQ PQPSQLVAQI 60 DVDEFRSLTP EQLCNDLQQL YLYTAIERGP GCHDLPDRRV YIGQDPLDRN RILGWWISKV 120 SKENILGIST DDPELQISIG YKKPYVYHIG NKRKDAVGTH WHMIEYTTEP DHSNSKGSGI 180 LYNWSLKRIY LGKKKSTRQR RGSNNVHADE CHDGSCPINA PRDPTIPEDA DLALDFDEFN 240 NETHCVLHLG DKKKAVACGQ ILTLGSNIHN VSLGEGNVRV AINLALDEDA LLPIPVGGEM 300 RTVGDAVKSI VAWPRDLVIM LKKGVKEKQV PKERSLKGKS FKAVQDNRPQ SWKDLEDHAK 360 NKMHDGSLVD FAAEDQAFGH SRIVLLGRSS ILDLIEMRQL EQEVIAAYMS HLYEQSKNST 420 TTSVVRFVDP AHVCNTGNSK NPQIQERAGR LTQRLMQVTS SSIFLIPYNP TNHWFLTIIS 480 QSKDIVYVMN SINNWPLDEN WKNVINTGIK GYNEQTGRQH KVPEWRILQG TPQQEGVVEC 540 GYFLMLYMKE IVEDSTLSFH TKFASTEKVY TPKDIDPVRY EWATYVSSKL PQDTSSEF

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MSAPPPDVPE HLVRDGDMHQ LLNDIRDRVI DEPSDQELIL YFLNRWIHSQ PQPSQLVAQI  60
DVDEFRSLTP EQLCNDLQQL YLYTAIERGP GCHDLPDRRV YIGQDPLDRN RILGWWISKV  120
SKENILGIST DDPELQISIG YKKPYVYHIG NKRKDAVGTH WHMIEYTTEP DHSNSKGSGI  180
LYNWSLKRIY LGKKKSTRQR RGSNNVHADE CHDGSCPINA PRDPTIPEDA DLALDFDEFN  240
NETHCVLHLG DKKKAVACGQ ILTLGSNIHN VSLGEGNVRV AINLALDEDA LLPIPVGGEM  300
RTVGDAVKSI VAWPRDLVIM LKKGVKEKQV PKERSLKGKS FKAVQDNRPQ SWKDLEDHAK  360
NKMHDGSLVD FAAEDQAFGH SRIVLLGRSS ILDLIEMRQL EQEVIAAYMS HLYEQSKNST  420
TTSVVRFVDP AHVCNTGNSK NPQIQERAGR LTQRLMQVTS SSIFLIPYNP TNHWFLTIIS  480
QSKDIVYVMN SINNWPLDEN WKNVINTGIK GYNEQTGRQH KVPEWRILQG TPQQEGVVEC  540
GYFLMLYMKE IVEDSTLSFH TKFASTEKVY TPKDIDPVRY EWATYVSSKL PQDTSSEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	7e-08	NAC family protein