PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021567.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 534aa MW: 57793.7 Da PI: 5.7116

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021567.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	349	391	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L PCP021567.1 349 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 391 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MLPRLNGGVW MDDREDRDSV SWTRTSAAAA AGSTENKDEM GSSLSTFKSM LEVEDDWYMA 60 ANNSIQGHSD VRDITFSPSF ADPESLLLNP VDSSSSCSPS SSVFNNLDPN QVHYYMPQNP 120 NLSSLLNVVP NNPLDHGFDL GCDIGFLDTQ ASGGGSSMMN RGGGVLSGFN DLSSNNQMNA 180 QNLGSNLQFS TTRMPQVLEN SSKFSGFLGV DDGSANALFP NRPKLLRPLE SFPSVGVQPT 240 LFQKRAALRK NISDGGGNLG VLGSQGGLVL NQGDVQNEKK RKMSGGDDVD DLSFDGSGLN 300 YDSDDFTENT KVDDGAKNGG NISNANSTVT GGRGGHKGKK KGLPAKNLMA ERRRRKKLND 360 RLYMLRSVVP KISKMDRASI LGDAIEYLKE LLQRINNLHN ELESIPPGSA LTPTGNTFHP 420 LTPTPATLPN RIKEELCPSS LPSPNGQAAR VEVRLREGRT VNIHMFCGRR PGLLLSTMRT 480 LDNLGLDIQQ AVISCFNGFA MDVFRAEQCK EGQDVDPDQI KAVLLDSIGF HGMM

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MLPRLNGGVW MDDREDRDSV SWTRTSAAAA AGSTENKDEM GSSLSTFKSM LEVEDDWYMA  60
ANNSIQGHSD VRDITFSPSF ADPESLLLNP VDSSSSCSPS SSVFNNLDPN QVHYYMPQNP  120
NLSSLLNVVP NNPLDHGFDL GCDIGFLDTQ ASGGGSSMMN RGGGVLSGFN DLSSNNQMNA  180
QNLGSNLQFS TTRMPQVLEN SSKFSGFLGV DDGSANALFP NRPKLLRPLE SFPSVGVQPT  240
LFQKRAALRK NISDGGGNLG VLGSQGGLVL NQGDVQNEKK RKMSGGDDVD DLSFDGSGLN  300
YDSDDFTENT KVDDGAKNGG NISNANSTVT GGRGGHKGKK KGLPAKNLMA ERRRRKKLND  360
RLYMLRSVVP KISKMDRASI LGDAIEYLKE LLQRINNLHN ELESIPPGSA LTPTGNTFHP  420
LTPTPATLPN RIKEELCPSS LPSPNGQAAR VEVRLREGRT VNIHMFCGRR PGLLLSTMRT  480
LDNLGLDIQQ AVISCFNGFA MDVFRAEQCK EGQDVDPDQI KAVLLDSIGF HGMM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	339	357	KKKGLPAKNLMAERRRRKK
2	351	358	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-129	bHLH family protein