PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022055.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 841aa MW: 92226.7 Da PI: 6.8128

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022055.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.8	4.2e-11	370	426	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g PCP022055.1 370 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 426 57*****************4444.2455535555.779999************98 PP
2	AP2	46.4	1e-14	469	520	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PCP022055.1 469 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 520 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence
MNWLGFSLSP QEVVPTDPMI SEGADRRRHQ HGQDLHDLSD QTTTPVSRFG FKYSDEISGT 60 DTSGDCFDLT NSHDDSSATT TAPKHHSLNQ LPPSFGMLHQ ACVQLPSYHI LAGADWNMNS 120 SESTNYKITS DHLSMLMGRS NSCNTLNLEN HHNRHHQQPK LENFLGRHSF IADHHDHIQS 180 STNSAHGYNN NTASTNTTDY IFSRTVSSLQ LPLESAGPTD VINGDGPGGD INNNSSSSNI 240 GLSMIKTWLR NQPAPQQQEM NKNDINGIGV SNTSTSTTAS TTSAQTLSLS MSTTASTTSA 300 QTLSLSMSTA GATTAGDQTC SSDRDNNKQA IIRTAAVTTT QSGIDSQTST ATAIEAVPRK 360 SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQTR KGRQGGYDKE EKAARAYDLA 420 ALKYWGTTTT TNFPISNYEK EVDEMKHMTR QEFVASLRRK SSGFSRGASI YRGVTRHHQH 480 GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMT RYDVKSILES 540 STLPISGAAK RLKDVEQAHH QHQHEMTLLA DGHHRSTTDD QREKLMMMTR STSTSNCHDQ 600 YHQQLINGDH HGMSVNNVWP TLALTQAAAA AAHQAVAPPF GMPYYSSVPY NSNGGQRVWC 660 KQEQDTNSQS FYQPQDYHHQ DLHHHQLLQL GSTHNFLQPV NLLGNSTTTD SMEHSSGSNS 720 VIYNGTTAGD HGGYMIPMGT VIANGHENNS NAFGDGSSDH DQVKAALGYE NVFGSSSTTT 780 AADAYNHAKS LYYLPVQAPQ SSSVSSVGVA KGSSEYNNWV PIAVPTSTNN MAPFTVWNDT 840 N

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence

MNWLGFSLSP QEVVPTDPMI SEGADRRRHQ HGQDLHDLSD QTTTPVSRFG FKYSDEISGT  60
DTSGDCFDLT NSHDDSSATT TAPKHHSLNQ LPPSFGMLHQ ACVQLPSYHI LAGADWNMNS  120
SESTNYKITS DHLSMLMGRS NSCNTLNLEN HHNRHHQQPK LENFLGRHSF IADHHDHIQS  180
STNSAHGYNN NTASTNTTDY IFSRTVSSLQ LPLESAGPTD VINGDGPGGD INNNSSSSNI  240
GLSMIKTWLR NQPAPQQQEM NKNDINGIGV SNTSTSTTAS TTSAQTLSLS MSTTASTTSA  300
QTLSLSMSTA GATTAGDQTC SSDRDNNKQA IIRTAAVTTT QSGIDSQTST ATAIEAVPRK  360
SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQTR KGRQGGYDKE EKAARAYDLA  420
ALKYWGTTTT TNFPISNYEK EVDEMKHMTR QEFVASLRRK SSGFSRGASI YRGVTRHHQH  480
GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMT RYDVKSILES  540
STLPISGAAK RLKDVEQAHH QHQHEMTLLA DGHHRSTTDD QREKLMMMTR STSTSNCHDQ  600
YHQQLINGDH HGMSVNNVWP TLALTQAAAA AAHQAVAPPF GMPYYSSVPY NSNGGQRVWC  660
KQEQDTNSQS FYQPQDYHHQ DLHHHQLLQL GSTHNFLQPV NLLGNSTTTD SMEHSSGSNS  720
VIYNGTTAGD HGGYMIPMGT VIANGHENNS NAFGDGSSDH DQVKAALGYE NVFGSSSTTT  780
AADAYNHAKS LYYLPVQAPQ SSSVSSVGVA KGSSEYNNWV PIAVPTSTNN MAPFTVWNDT  840
N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-122	AP2 family protein