PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022247.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 445aa MW: 50321.3 Da PI: 6.611

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022247.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	57.2	4.9e-18	323	379	43	99
DUF260 43 lkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ PCP022247.1 323 HKLLNEVHPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDETNA 379 699*************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MAAEINPVEM SMAAEINPVK NPVIFEQKQI VEELVKRMTD RELEIQSSDG WTALAYAARD 60 NLKMVECMVT KYTKLVGIAE EGRQMIPILI AAMYDQWDIV RYLYSLTSKD LEADKGPDSS 120 QLVVFCLFAK QFVFGLFQGL PLRLSDFFGI SRIRELKSTH VQLSSILNYM RDAIRHLNHQ 180 EMRDGLVYEA VYSAVRNGTV ELVRSLCDAR PELLFRGLED GKNIFHYAVE CRQEKVYSLI 240 YGVRKRNLIT TLRDNSDNSI LHYAGMLSPL AKKKLDGIAG AALQMQRERQ WYKEVESIVV 300 PLSGASSLNK DGLTPAQLFT EKHKLLNEVH PHQREDAVNS LAYEAEARMK DPVYGCVGAI 360 SVLQRQVIRL QKELDETNAD LVRYASSYNH EILLPTSQSE RSSSSRVRGG GSLGQNSGSY 420 FSPSWNRNAY GERNYERGGE GEGDI

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MAAEINPVEM SMAAEINPVK NPVIFEQKQI VEELVKRMTD RELEIQSSDG WTALAYAARD  60
NLKMVECMVT KYTKLVGIAE EGRQMIPILI AAMYDQWDIV RYLYSLTSKD LEADKGPDSS  120
QLVVFCLFAK QFVFGLFQGL PLRLSDFFGI SRIRELKSTH VQLSSILNYM RDAIRHLNHQ  180
EMRDGLVYEA VYSAVRNGTV ELVRSLCDAR PELLFRGLED GKNIFHYAVE CRQEKVYSLI  240
YGVRKRNLIT TLRDNSDNSI LHYAGMLSPL AKKKLDGIAG AALQMQRERQ WYKEVESIVV  300
PLSGASSLNK DGLTPAQLFT EKHKLLNEVH PHQREDAVNS LAYEAEARMK DPVYGCVGAI  360
SVLQRQVIRL QKELDETNAD LVRYASSYNH EILLPTSQSE RSSSSRVRGG GSLGQNSGSY  420
FSPSWNRNAY GERNYERGGE GEGDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-32	LBD family protein