PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022302.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 169aa MW: 19056.9 Da PI: 8.8418

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022302.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.6	6.7e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr g+lKKA+EL +LCdaevaviifs+tg+l+e+ss PCP022302.1 9 KRIENANSRQVTFSKRRSGLLKKAQELAILCDAEVAVIIFSNTGRLFEFSS 59 79***********************************************96 PP
2	K-box	64.7	3.4e-22	86	155	12	81
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 + +++ ++el++Lk+e+ nLq++q +llG++L+ LslkeLqqLeqqL+++l ++++K++ll+eq+e+++ PCP022302.1 86 EIQKQDSKELDNLKDEYANLQKKQLRLLGKELTGLSLKELQQLEQQLNEGLLAVKERKEQLLMEQLEQSR 155 44677899***********************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence
MGRGKIEIKR IENANSRQVT FSKRRSGLLK KAQELAILCD AEVAVIIFSN TGRLFEFSSA 60 GMKQTLSRYN KCLDSSEDAP EEGKAEIQKQ DSKELDNLKD EYANLQKKQL RLLGKELTGL 120 SLKELQQLEQ QLNEGLLAVK ERKEQLLMEQ LEQSRIQVCG STKVAPSLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	6e-52	MIKC_MADS family protein