PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP022328.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 195aa    MW: 23164.2 Da    PI: 10.1708
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP022328.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.77.3e-091250443
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                  n+s ++ tf k r+g +KK +E+  LCd+  + i++s++
  PCP022328.1 12 MNNSSQKATFRKKRKGFMKK-YEINKLCDVLTCAIMYSPN 50
                 5889999*************.9****************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MTRKKVKLAF MMNNSSQKAT FRKKRKGFMK KYEINKLCDV LTCAIMYSPN KSQPDAWPDH  60
SEVRRLIEQF KNMPEEERNK VMVNHKMFLK QMVEMELEKV NKLEKGNREL EIWMAMNHFI  120
AGKPLNDLQF TDLKEMRRMI EEKLKEFEAN IKSWKEELAK MNQLLGAQPT VAGENIQNVM  180
QMVPWSMWDV PTKSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFMMNNSSQKATFRKKR
21726QKATFRKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-31M-type_MADS family protein