PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022339.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 418aa MW: 46853.1 Da PI: 9.1868

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022339.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	77.7	1.8e-24	275	333	2	60
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekr 60 C v+gC+adls+++eyhr+h++Ce sk+pvv+v+ +++rfCqqCsr h+l e De++ PCP022339.1 275 CLVDGCRADLSRCREYHRQHRICELRSKTPVVVVKREQKRFCQQCSRVHSLVELDEGRG 333 ********************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MAVVLMQHQP LINADDFINL MKIDSSTSNS HREGGGEEEY QVGGGGHGSG IYNKENQEML 60 PSYDFQLVRP YCCYPQPGPA PPANGGPIRA VEQRQRREIQ PAPEGPARNR GRYSPGTPIR 120 VCQQHPRAQT VFPQLPAASW VSKEVFDISL SLFRDAMEKK PSVCTTGWHT TVALFELHRR 180 SQKKKIEHLI NEVLAEAESG GPAIASRRAA MEWDFKDIDL DALVGTSISQ PQMKNRPAES 240 LGLDFKKLQE DPIKLSSSRR INGSNNGSDH LKVLCLVDGC RADLSRCREY HRQHRICELR 300 SKTPVVVVKR EQKRFCQQCS RVHSLVELDE GRGAAENVSM ELNHQQSNQS TPSVPSKKKN 360 WNPRNRPSMI FVKWERRGRW REARLSLGEP RELTSWSLAV VLGACAHGCA PSSALQTP

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MAVVLMQHQP LINADDFINL MKIDSSTSNS HREGGGEEEY QVGGGGHGSG IYNKENQEML  60
PSYDFQLVRP YCCYPQPGPA PPANGGPIRA VEQRQRREIQ PAPEGPARNR GRYSPGTPIR  120
VCQQHPRAQT VFPQLPAASW VSKEVFDISL SLFRDAMEKK PSVCTTGWHT TVALFELHRR  180
SQKKKIEHLI NEVLAEAESG GPAIASRRAA MEWDFKDIDL DALVGTSISQ PQMKNRPAES  240
LGLDFKKLQE DPIKLSSSRR INGSNNGSDH LKVLCLVDGC RADLSRCREY HRQHRICELR  300
SKTPVVVVKR EQKRFCQQCS RVHSLVELDE GRGAAENVSM ELNHQQSNQS TPSVPSKKKN  360
WNPRNRPSMI FVKWERRGRW REARLSLGEP RELTSWSLAV VLGACAHGCA PSSALQTP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	185	RRSQKKK
2	308	314	VKREQKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-22	SBP family protein