PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022375.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 353aa MW: 39417.2 Da PI: 8.9359

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022375.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.8e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl PCP022375.1 14 RGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	37.5	5.5e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ PCP022375.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 QRKEHQLARK SGLVKQDIIK RSGGVGGNSN SHSAILAADG QNSYWPELPV LAAPTVLPQQ 180 QQQPCFNDHA SIRKLLIKLG GRFSSDINHN HDTNQATQDS STDIQPTYQV LDDNNNIPYA 240 ATAVTPTHQM DEHYSGKNMQ SLLVPRHGIH ALNNSSAPVA LSNIDVISPH QFAQTHYMVN 300 TDNIDGAGNG IMHNMFQGQG GNYVTDHLKD MAVYNNNNTD NQQRFDGMEF LRL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
QRKEHQLARK SGLVKQDIIK RSGGVGGNSN SHSAILAADG QNSYWPELPV LAAPTVLPQQ  180
QQQPCFNDHA SIRKLLIKLG GRFSSDINHN HDTNQATQDS STDIQPTYQV LDDNNNIPYA  240
ATAVTPTHQM DEHYSGKNMQ SLLVPRHGIH ALNNSSAPVA LSNIDVISPH QFAQTHYMVN  300
TDNIDGAGNG IMHNMFQGQG GNYVTDHLKD MAVYNNNNTD NQQRFDGMEF LRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65790.1	2e-81	MYB family protein