PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022688.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 1027aa MW: 112505 Da PI: 5.0176

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022688.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	7.8e-11	337	379	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y k+L PCP022688.1 337 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYCKEL 379 79*******************66......*************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence
MLPMSSGAAW MGGDEHGAMS WTRNNNNSEA ELRRNDQDSS LGASFSNFKL MLEGDWYTNN 60 ILSNPAQDLH AFSSTQASET ALAPLQPNDS SASCSPSQAF SLDPSQPPQQ FLPPKSFFSS 120 LLNVVCSNPF DSNFDLGCDA GFLGSFQGNQ PSNSSLLMSF TALNSHSQMG TPEFSSSAEF 180 PASRLLPVTD NPNVLDGDIG FEGFDGSAGA QLLNGAKLLF PPMGAQPTLF QKRRQNSGGD 240 GADKLGNLEI SAPRYGGLVE NLEKKKKRNE EGEVEEESLD VSGLNYDSND FNEHSQVEVE 300 DNAKNGGNNS NANCTVTGVE GGDRKGKKKG LPAKNLMAER RRRKKLNDRL YMLRSVVPKI 360 SKMDRASILG DAIDYCKELL QRINDLHNEL DSAPPSSLLP PSTSFHPLTP PPSTLPCRVK 420 EEFCPSSLPS PKTQPKVEVW VREGRTVNIH MFCARRPGLF LSIMRALDNL DLDIQQAVIS 480 CFNGFALDVF QAEIELLLKV RNLINRLCWD LECVALVLRV SCEGGIADVL EKKQTDNQSL 540 GDNEKQLTCV MKFGGSSVAS AERMREVAHL ILSFPQERPV IVLSAMGKTT NKLLLAGEKA 600 VTCGVTNVSM IDELSFIKEL HLRTVEELGV DSSIISSHLE ELEQLLKGIA MMKELTLRTK 660 DYLVSFGECM STRLFAAYLN KIGVKARQYD AFEIGFITTD DFTNADILEV TYPAVAKRVQ 720 GDWICDPAIP IVTGFLGKGW KSCAVTTLGR GGSDLTATTL GKALGLREIQ VWKDVDGVLT 780 CDPNIYPRAE PVPYLTFEEA AELAYFGAQV LHPQSMRPAR EADIPVRVKN SYNPNAPGTV 840 ITHARDMSKA VLTSIVLKRN VTMLDIVSTR MLGQYGFLAK VFTTFEDLGI SVDVVATSEV 900 SISLTLDPSK LWSRELIQQA SELDHVVEEL EKIAVVNLLQ HRSIISLIGN VQRSSLILEK 960 AFQVLRTIGV NVQMISQGAS KVNISLVVND NEAEQCVRAL HQAFFGNDLF EVERGSENGS 1020 VLVSEQH

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence

MLPMSSGAAW MGGDEHGAMS WTRNNNNSEA ELRRNDQDSS LGASFSNFKL MLEGDWYTNN  60
ILSNPAQDLH AFSSTQASET ALAPLQPNDS SASCSPSQAF SLDPSQPPQQ FLPPKSFFSS  120
LLNVVCSNPF DSNFDLGCDA GFLGSFQGNQ PSNSSLLMSF TALNSHSQMG TPEFSSSAEF  180
PASRLLPVTD NPNVLDGDIG FEGFDGSAGA QLLNGAKLLF PPMGAQPTLF QKRRQNSGGD  240
GADKLGNLEI SAPRYGGLVE NLEKKKKRNE EGEVEEESLD VSGLNYDSND FNEHSQVEVE  300
DNAKNGGNNS NANCTVTGVE GGDRKGKKKG LPAKNLMAER RRRKKLNDRL YMLRSVVPKI  360
SKMDRASILG DAIDYCKELL QRINDLHNEL DSAPPSSLLP PSTSFHPLTP PPSTLPCRVK  420
EEFCPSSLPS PKTQPKVEVW VREGRTVNIH MFCARRPGLF LSIMRALDNL DLDIQQAVIS  480
CFNGFALDVF QAEIELLLKV RNLINRLCWD LECVALVLRV SCEGGIADVL EKKQTDNQSL  540
GDNEKQLTCV MKFGGSSVAS AERMREVAHL ILSFPQERPV IVLSAMGKTT NKLLLAGEKA  600
VTCGVTNVSM IDELSFIKEL HLRTVEELGV DSSIISSHLE ELEQLLKGIA MMKELTLRTK  660
DYLVSFGECM STRLFAAYLN KIGVKARQYD AFEIGFITTD DFTNADILEV TYPAVAKRVQ  720
GDWICDPAIP IVTGFLGKGW KSCAVTTLGR GGSDLTATTL GKALGLREIQ VWKDVDGVLT  780
CDPNIYPRAE PVPYLTFEEA AELAYFGAQV LHPQSMRPAR EADIPVRVKN SYNPNAPGTV  840
ITHARDMSKA VLTSIVLKRN VTMLDIVSTR MLGQYGFLAK VFTTFEDLGI SVDVVATSEV  900
SISLTLDPSK LWSRELIQQA SELDHVVEEL EKIAVVNLLQ HRSIISLIGN VQRSSLILEK  960
AFQVLRTIGV NVQMISQGAS KVNISLVVND NEAEQCVRAL HQAFFGNDLF EVERGSENGS  1020
VLVSEQH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	327	345	KKKGLPAKNLMAERRRRKK
2	339	346	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	2e-95	bHLH family protein