PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022752.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 421aa MW: 45269.6 Da PI: 7.9402

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022752.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49	1.1e-15	247	292	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq PCP022752.1 247 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 292 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MSQRVPSWDL DETATTPPAP RLSSRSHSLH TAPTDIPLLD YEVAELTWEN GEVAMHGLGP 60 PRLLAKPLSM TTKYTTWDKP RASGTLESIV NQATSTALPC PLKPPFDSSS GGGSGAKELV 120 TWFDRHRAVA TPSTTVTMDA LVPCRNQSDD PSSQMIESIS MPGVISGAGM VGCSTRVDSC 180 SGTTGAATHD DDTLLSGKGT SLARVPETPE WSSRSQSGEV GDEDDRKKRS TGKSSISTKR 240 SRAAAIHNQS ERKRRDKINQ RMKTLQKLVP NSSKTDKASM LDEVIEYLKQ LQAQVQMISR 300 MNMPAMMLPM AMQQLQMSMM AAAPRNMGMG MGIGMGMGMD MNNIGRPGIP PVLHPSAFMP 360 MAASWDGTGG DRLPAASTGV MPDHLSAFLA CQSQPMTMDA YSMMAAMYQQ FHQPPASSSK 420 G

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MSQRVPSWDL DETATTPPAP RLSSRSHSLH TAPTDIPLLD YEVAELTWEN GEVAMHGLGP  60
PRLLAKPLSM TTKYTTWDKP RASGTLESIV NQATSTALPC PLKPPFDSSS GGGSGAKELV  120
TWFDRHRAVA TPSTTVTMDA LVPCRNQSDD PSSQMIESIS MPGVISGAGM VGCSTRVDSC  180
SGTTGAATHD DDTLLSGKGT SLARVPETPE WSSRSQSGEV GDEDDRKKRS TGKSSISTKR  240
SRAAAIHNQS ERKRRDKINQ RMKTLQKLVP NSSKTDKASM LDEVIEYLKQ LQAQVQMISR  300
MNMPAMMLPM AMQQLQMSMM AAAPRNMGMG MGIGMGMGMD MNNIGRPGIP PVLHPSAFMP  360
MAASWDGTGG DRLPAASTGV MPDHLSAFLA CQSQPMTMDA YSMMAAMYQQ FHQPPASSSK  420
G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	256	ERKRRD
2	252	257	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-83	bHLH family protein