PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022803.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 831aa MW: 92001.2 Da PI: 7.505

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022803.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	364	384	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f+ +G C++Gd+Ck+ H+ PCP022803.1 364 CNRFFNMGSCSHGDSCKYLHP 384 ********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 831 aa Download sequence
MASVGVAPTS SRREPSGHVV GVDKLPEEMN DMKIRDDKEM ESTVAVVDGN GTETGHIIVT 60 TIGGRNGQPK QTISYMAERV VGHGSFGVVF QAKCLETGET VAIKKVLQDK RYKNRELQTM 120 RLLDHPNVVS LKHCFFSTTE KDELYLNLVL EYVPETVHRV IKHYNKLNQR MPLIYVKLYT 180 YQIFRSLSYI HRCIGVCHRD IKPQNLLVNP HTHQVKLCDF GSAKVLVKGE PNISYICSRY 240 YRAPELIFGA TEYTSAIDVW SVGCVLAELL LGQPLFPGES GVDQLVEIIK VLGTPTREEI 300 KCMNPNYTEF KFPQIKAHPW HKIFHKRMPP EAVDLVSRLL QYSPNLRCTA IPTMLTQRAT 360 KGVCNRFFNM GSCSHGDSCK YLHPNNSQQD TVLIDTNQSS TFQENQSVGG SSLPDVVVRD 420 HTGTSSSNLP PSLMPPPEGG HPRLPFGNGV KDDTEAFKDT WNAVCQAEIS TAAMFLVPNN 480 LSFLIQPIVF EGPCKSRLVF QIEGALMPPD GPDQWPPNTK RQDWLLFKEV HRMLMQGNGL 540 LNGRGEKWWD LPCKPHKGGK GPCDSPSIIR FSKGSDLFVR GLRLENSPKI HIRFDSCAHV 600 SVESISIISP EDSPNTDGIH IEDTTNAEIH HSTISTGDDC VSIGTGCYNV DISYMTCGPS 660 HGISIGSLGK GNSQACVTNI TVSDSIIKNS NNGVRIKTWQ GGSGMVSKVT FKDIHMDTVL 720 NPIIINQFYC LKKQCSNQTS AVLIDSVQFS NIMGTYDSRK PPMHLACSDS LPCKNLTLSG 780 IHLLPAQGGT HLDPFCSQAF GTKDAFSTPQ VPCLMTGYPK GLENEVDRSC F

Sequence ? help Back to Top

Protein Sequence Length: 831 aa Download sequence

MASVGVAPTS SRREPSGHVV GVDKLPEEMN DMKIRDDKEM ESTVAVVDGN GTETGHIIVT  60
TIGGRNGQPK QTISYMAERV VGHGSFGVVF QAKCLETGET VAIKKVLQDK RYKNRELQTM  120
RLLDHPNVVS LKHCFFSTTE KDELYLNLVL EYVPETVHRV IKHYNKLNQR MPLIYVKLYT  180
YQIFRSLSYI HRCIGVCHRD IKPQNLLVNP HTHQVKLCDF GSAKVLVKGE PNISYICSRY  240
YRAPELIFGA TEYTSAIDVW SVGCVLAELL LGQPLFPGES GVDQLVEIIK VLGTPTREEI  300
KCMNPNYTEF KFPQIKAHPW HKIFHKRMPP EAVDLVSRLL QYSPNLRCTA IPTMLTQRAT  360
KGVCNRFFNM GSCSHGDSCK YLHPNNSQQD TVLIDTNQSS TFQENQSVGG SSLPDVVVRD  420
HTGTSSSNLP PSLMPPPEGG HPRLPFGNGV KDDTEAFKDT WNAVCQAEIS TAAMFLVPNN  480
LSFLIQPIVF EGPCKSRLVF QIEGALMPPD GPDQWPPNTK RQDWLLFKEV HRMLMQGNGL  540
LNGRGEKWWD LPCKPHKGGK GPCDSPSIIR FSKGSDLFVR GLRLENSPKI HIRFDSCAHV  600
SVESISIISP EDSPNTDGIH IEDTTNAEIH HSTISTGDDC VSIGTGCYNV DISYMTCGPS  660
HGISIGSLGK GNSQACVTNI TVSDSIIKNS NNGVRIKTWQ GGSGMVSKVT FKDIHMDTVL  720
NPIIINQFYC LKKQCSNQTS AVLIDSVQFS NIMGTYDSRK PPMHLACSDS LPCKNLTLSG  780
IHLLPAQGGT HLDPFCSQAF GTKDAFSTPQ VPCLMTGYPK GLENEVDRSC F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.2	2e-16	WRKY family protein