PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP022822.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 167aa    MW: 19686.1 Da    PI: 10.0756
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP022822.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.97e-151251342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i n+  r++++ kR+ng +KK +E+ +LCd+ v+ ii+s+
  PCP022822.1 12 IMNDASRKTSYNKRKNGFIKKMHEINILCDVPVCGIIYSP 51
                 8899**********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MAGRKKVKLA YIMNDASRKT SYNKRKNGFI KKMHEINILC DVPVCGIIYS PYESQPVVWP  60
NLLESQRLIT KFRSMPEAER NKKMVTHEMF LKQRIEKQQE KLNNLKKENR EKQIRMLMNQ  120
CLTGRPLTGL DLNDLNDMEC MIKECVTEIV AQIKSRKEEN LAERNQP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-34M-type_MADS family protein