PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP022823.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 158aa    MW: 18924.2 Da    PI: 10.3862
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP022823.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.65.9e-121051243
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 +i n+s r+vtf k + g +KK +E+  LCd   + +i+s++
  PCP022823.1 10 FIMNDSSRKVTFRKKKRGFMKKMFEINKLCDFLTCAVIYSPD 51
                 799*************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MTRRKVNLAF IMNDSSRKVT FRKKKRGFMK KMFEINKLCD FLTCAVIYSP DEPQPDVWPN  60
PSEARRLIEQ FENMPEEERN KKMVTHEMFL KQMVEKEQEK VNKQKKENRE VEIWLAMNQC  120
LTGKPLNGLA FTDIQEIGWM IDGRLKEVVA IQRRRKRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRKVNLAFIMNDSSRKVTFRKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-27M-type_MADS family protein