PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022935.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 217aa MW: 24533.1 Da PI: 6.7935

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022935.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78	6.8e-25	19	62	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKAeELS+LC+ evaviifs+tgkl+++ss PCP022935.1 19 ARQVTFSKRRRGIFKKAEELSILCESEVAVIIFSQTGKLFDFSS 62 79****************************************96 PP
2	K-box	28.6	6e-11	88	162	14	88
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 + +++ +L ke+e r++R+l+GedL++L+l eLq+Le+ +e s ++ ++K + l+e ++l++++ +l+ PCP022935.1 88 LQLEKENTIRLSKELEDKTRKLRQLKGEDLHDLDLDELQKLEKLVEASHGRVMETKGDELVEANNQLKQRMVMLS 162 5566777889999999999**************************************************998875 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MVKIRKEKIK IRRIDYLPAR QVTFSKRRRG IFKKAEELSI LCESEVAVII FSQTGKLFDF 60 SSSSTKDVIA RYKSHIGEKS NQPMLDQLQL EKENTIRLSK ELEDKTRKLR QLKGEDLHDL 120 DLDELQKLEK LVEASHGRVM ETKGDELVEA NNQLKQRMVM LSARGDIGPT AIKELENLNN 180 GGEEGVTSES ATNVTICSNS PLSLEDDCSD ILSLKLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	5e-34	MIKC_MADS family protein