PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP023022.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 144aa    MW: 16204 Da    PI: 9.2121
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP023022.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.11.5e-25957149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifss+gkl+e 
  PCP023022.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSSHGKLFEL 57
                 79********************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSS HGKLFELATK  60
GSLALSIYFC IIILSMQGLI ERYMKMKPTR VSHAEQTVET ETLVCLKENT HTYLEDVEYC  120
TTYKTNIIGI LIHKASAASG AGYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-38MIKC_MADS family protein