PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023202.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 238aa MW: 25645.3 Da PI: 9.2776

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023202.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.3e-18	29	74	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v ++G+++W++I+r++ gR++k+c++rw + PCP023202.1 29 KGPWSAEEDRVLTQLVDRYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 74 79***************************9.*********985 PP
2	Myb_DNA-binding	53.4	5.9e-17	83	125	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ PCP023202.1 83 PFSQAEDETILAAHARFGNR-WATIARLLP-GRTDNAVKNHWNST 125 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MCSSSTSSSG ASSSESSLPR NPNKPERIKG PWSAEEDRVL TQLVDRYGPR NWSLISRYIK 60 GRSGKSCRLR WCNQLSPSVQ HRPFSQAEDE TILAAHARFG NRWATIARLL PGRTDNAVKN 120 HWNSTLKRRV MGDQLTEGGS FGGGGGGGNV GSNEGMSTSS VSGSLANGSM EFDPLTELTL 180 APPGIGSGSG GAKVGEQQRN NESGPSGFWD SMRDVIAREV RDYVATTFSE PSELHRLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-57	MYB family protein