PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023272.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 551aa MW: 59644.2 Da PI: 4.9119

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023272.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.3e-17	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l PCP023272.1 39 KGPWTSAEDTILVEYVNRHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	51.6	2.2e-16	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ l+v++++++G++ W++ a++++ gRt++++k++w++ PCP023272.1 92 KGAFTPDEERLIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MSRTTNDSED GVLYKDQIDS PLMDESNGGS GNGGIVLKKG PWTSAEDTIL VEYVNRHGEG 60 NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTPDEE RLIVELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALQES QQGQSSGGIN GADRAHNDSM 180 QTNSFEIPDV VFDSLQGNNC VLPYVPELPD ISSGGMLMKG LGSSPYCGFM APTMHRQKRL 240 RESTALFSTS GGSFKNGFPQ FDQFPNDTCE KVARTVGLPF PHDPDPTIPL SFGVIQGSHS 300 LSNGNSSASK PTTGAVKLEL PSLQYPETDL GSWSTSPPPP LLESVDAFIQ SPPPVGTFES 360 DCTSPRNSGL LDALLHEAKT LGSANNHSSE KSSNSSSVTP GDVAESSNLN ICETEWEEYR 420 DPISPVGHSA TSLFSECTPI SASGSSLDEP LPTETFTGCN VKSELVDQAW TPDTERETAL 480 QLDYTRPDAI LASEWFGNGM HESIASLLGD DLAAECKHLA SGSPTSNQGL GFSSCPWNTM 540 LPVCQMSAQH P

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MSRTTNDSED GVLYKDQIDS PLMDESNGGS GNGGIVLKKG PWTSAEDTIL VEYVNRHGEG  60
NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTPDEE RLIVELHAKM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALQES QQGQSSGGIN GADRAHNDSM  180
QTNSFEIPDV VFDSLQGNNC VLPYVPELPD ISSGGMLMKG LGSSPYCGFM APTMHRQKRL  240
RESTALFSTS GGSFKNGFPQ FDQFPNDTCE KVARTVGLPF PHDPDPTIPL SFGVIQGSHS  300
LSNGNSSASK PTTGAVKLEL PSLQYPETDL GSWSTSPPPP LLESVDAFIQ SPPPVGTFES  360
DCTSPRNSGL LDALLHEAKT LGSANNHSSE KSSNSSSVTP GDVAESSNLN ICETEWEEYR  420
DPISPVGHSA TSLFSECTPI SASGSSLDEP LPTETFTGCN VKSELVDQAW TPDTERETAL  480
QLDYTRPDAI LASEWFGNGM HESIASLLGD DLAAECKHLA SGSPTSNQGL GFSSCPWNTM  540
LPVCQMSAQH P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-124	MYB family protein