PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023301.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 461aa MW: 50329.6 Da PI: 7.0031

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023301.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.9e-17	54	98	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+ PCP023301.1 54 RAKWTEEEHQKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 98 569*****************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MAVEDKIEAT GSNTSVAVGN CSSNGDAQSN AEICSFGSDH APKVRKPYTI TKQRAKWTEE 60 EHQKFLEALK LYGRGWRQIE EHVGTKTAVQ IRSHAQKFFS KVSKESCGPS EGSIRPIEIP 120 PPRPKRKPVH PYPRKSVDCL NGTPERSPSP QFSAQGKDQQ SPPSVLSAQG SDVLGSAALD 180 QHNRSSTPTS CTTDMRSTGP SHFEKENDYL AFSSSAEEVQ GSSPSVQLSA DSVLENFPSV 240 NYRSGSKHTV STEEDAGHSG ASASIKLFGR TVLVPYSEKQ SPTGAEDSKT PTSKVEQDNC 300 ERDNDKLVQT PRSDALDTSL TLGGIVGNLD PSACGATTDW EHQKHSPNPE APLPWWAMYH 360 GLPYFHIRSC NQNSAQIQIR VDSCADETIK QTERSFGSAV ESLGEKHIES VSSLREETRS 420 APCSSRKGFV PYKRCLADLS KNSSVIVSED MRDRQRARVC S

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MAVEDKIEAT GSNTSVAVGN CSSNGDAQSN AEICSFGSDH APKVRKPYTI TKQRAKWTEE  60
EHQKFLEALK LYGRGWRQIE EHVGTKTAVQ IRSHAQKFFS KVSKESCGPS EGSIRPIEIP  120
PPRPKRKPVH PYPRKSVDCL NGTPERSPSP QFSAQGKDQQ SPPSVLSAQG SDVLGSAALD  180
QHNRSSTPTS CTTDMRSTGP SHFEKENDYL AFSSSAEEVQ GSSPSVQLSA DSVLENFPSV  240
NYRSGSKHTV STEEDAGHSG ASASIKLFGR TVLVPYSEKQ SPTGAEDSKT PTSKVEQDNC  300
ERDNDKLVQT PRSDALDTSL TLGGIVGNLD PSACGATTDW EHQKHSPNPE APLPWWAMYH  360
GLPYFHIRSC NQNSAQIQIR VDSCADETIK QTERSFGSAV ESLGEKHIES VSSLREETRS  420
APCSSRKGFV PYKRCLADLS KNSSVIVSED MRDRQRARVC S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	1e-51	MYB_related family protein