PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP023302.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 637aa    MW: 70893.2 Da    PI: 7.3585
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP023302.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.1e-202681156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++ +++t++q+++Le +++++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  PCP023302.1 26 KKRYHRHTTHQIQRLEGMYKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQMK 81
                 678899***********************************************998 PP
2START180.68.9e-5716737617206
                  C-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEECTT......EEEEEEE CS
        START  17 eepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWdetlakaetlevissg......galqlmv 95 
                  +ep+W+kss    + +n +++ ++f+++++       ++ea+r+sgvv+m+   lv  ++d ++    + + +  a t+evissg      g lqlm+
  PCP023302.1 167 NEPLWMKSStdgrDVLNLETYERNFPRANShlknpnVRIEASRDSGVVIMNGLALVDMFMDPNKfgeLFPTIVSMARTIEVISSGmlgshsGSLQLMY 264
                  79**********999***********9999*****99**************************67767777777************************ PP

                  EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHH CS
        START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglae 191
                  +elq+lsplvp R+f+f+Ry++q ++g w+ivdvS d +q+++   s  R+++lpSg+li++++ng+skvtwvehv+ ++++p h ++r l++sgla+
  PCP023302.1 265 NELQVLSPLVPtREFYFLRYCQQIEQGLWIIVDVSYDFPQDNQ-FTSQCRSHRLPSGCLIQDMPNGYSKVTWVEHVEIEDKVPtHRIYRDLIHSGLAF 361
                  ******************************************9.79999************************************************* PP

                  HHHHHHHHTXXXXXX CS
        START 192 gaktwvatlqrqcek 206
                  ga +w+a+lqr ce+
  PCP023302.1 362 GAERWLAALQRMCER 376
                  *************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    
MEYGSGGGGS GSGDHHDEAS GSQRRKKRYH RHTTHQIQRL EGMYKECPHP DEKQRMQLSR  60
ELGLAPRQIK FWFQNRRTQM KAQNERADNS ALRAENDKIR CENIAIREAL KNVICPSCGV  120
PPLNEDSYFD EHKLRMENAQ LKEELDRVSS IAAKYIGRPI SQLSPTNEPL WMKSSTDGRD  180
VLNLETYERN FPRANSHLKN PNVRIEASRD SGVVIMNGLA LVDMFMDPNK FGELFPTIVS  240
MARTIEVISS GMLGSHSGSL QLMYNELQVL SPLVPTREFY FLRYCQQIEQ GLWIIVDVSY  300
DFPQDNQFTS QCRSHRLPSG CLIQDMPNGY SKVTWVEHVE IEDKVPTHRI YRDLIHSGLA  360
FGAERWLAAL QRMCERIACL MVSGTSTRDL EGVIPSPEGK RSMMKLAQRM VNNFCASISS  420
SNRHRWTTLS GTNEIGVRVT IHKITDPGQP NGVVLSAATT IWLPLSPQNV FNFFKDERTR  480
PQWDVLSNGN AVQDVAHIAN GSHPGNCISV LRAFNTSQNN MLILQQSCID SSGSLVVYSP  540
VDLPAINIAM SGEDPSYIPL LPSGFSISPD GRADQGDCAS SSSCNATGSG SLITVAFQIL  600
VSSLPSTKLN LESVNTVNTL IGNTVQQIKT ALNCNSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein