PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP023358.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 200aa    MW: 22754.2 Da    PI: 7.5054
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP023358.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.94.6e-172470349
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 ie      v+fskRr g++ KA  LS LC+aevavi+fs+ g+ly +
  PCP023358.1 24 IEKPNSLLVSFSKRRGGLFRKACQLSRLCGAEVAVIVFSPCGRLYVF 70
                 555566679************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MPGIISTALP NKKPVQRKLV IKKIEKPNSL LVSFSKRRGG LFRKACQLSR LCGAEVAVIV  60
FSPCGRLYVF GHPSADSVLS RLERVNNALH GRQYISMHAS SEDEDHDTDS SINESNSIES  120
CMVSKTSIDL ENLGLDLQKD TEEMEEDEAS KFWWDQPIET VKKLDELKQF KSSLEKLKAK  180
VITQLDEMEM RKLVVRHYLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-24M-type_MADS family protein