PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP023456.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 346aa    MW: 38298.6 Da    PI: 7.8677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP023456.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12168215355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L   ++YIk+Lq
  PCP023456.1 168 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDSIKYIKQLQ 215
                  5699************************.....9******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MEISSRGGLS ELGMEDPFFI NQLQYMNSLD ELGMLPLATA IGDNLQHSHF HPTFNFKTPI  60
DNSHTGIDGP AKQLKTDGWT SCKTNHLGSN PQVASSPNIL SFINSNHANQ MAVLKPKEEA  120
AAVCSKSTNS LPSDILLSQG SFGNQNCLFK ASQGTNMNST NPRLSATQDH IIAERKRREK  180
LSQRFIALSA LIPGLKKMDK ASVLGDSIKY IKQLQDKVKT LEEQTRNKNM ESVMFVKKTQ  240
LFSNGDKTSS DESNSTGPFD ATLPEIEARF CDNNVLIRIH CEKRKGVVEK TISEVEKLQL  300
KFINSSVMTF GSCALDVTII AQMEAEFSLS VQDLVKNLRT AFNLFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRE
2175180RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-63bHLH family protein