PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023470.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 724aa MW: 79251 Da PI: 10.6342

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023470.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31	5.8e-10	33	85	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 +W t+E++ll++avk++G ++W+t+a +++ + t+ +c ++++++ PCP023470.1 33 SSWGTWEELLLACAVKRHGVHDWDTVAMELQaktslppLLTTASNCNLKYLDL 85 57*****************************8888888667888888887766 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MKGGAAAAAD TPSFNNNDNN ITTTSDQTTT STSSWGTWEE LLLACAVKRH GVHDWDTVAM 60 ELQAKTSLPP LLTTASNCNL KYLDLRRRFH SRQQNDDVPP DVDDVHHDPH NNNTTNIPWL 120 DDLRKLRVAQ LRQELHGYDV SIVSLQLKVK RLEEEREDSF KDDDPKPDLE EQQQQDSNRH 180 RSENDKTVRG KPDGSKPDHE NQSVNGSNST CSKNLDHDNK PGPGDRALSE PGPLSAGSDE 240 PSKKTGSGQS DSDSDKGSSE TVAKKRRVRG RQGKGGGDSA GELRESSEAQ SSVSLTKKKN 300 GKRHRRMEVP EQQQQHNNED VSLVKSEPLI EVLQLIRAHE HGSLFERRLS AQESDKYKSI 360 VQQHVDLETI QSKLRKDSYS SCSLSFYRDL LLLFNNAVVF FPKSSLHSKT AHQLRRLVLN 420 EMKKKNLITR PNHDPAPEPS DSVVPAPATS QQPKRPDQLE RSDSLLSKQK SSTAPIIVCR 480 KRSSISSKPS AAAPSFGQTL KGDDNKKAAA FDLKSSIKNS KASSDNHAAA QKHGGSVVLK 540 SAAAAKAKDN PVITGTRGSR RTSTSIAHHE NNTSASKKKQ SASPASLKAE TPKANKNGKM 600 EAAGSDKKRS AAADFLKRIK RNSPADTLKR GGTGTGTSSR SGGEQKRRGG IGKADKVKER 660 VLRQSVNKKK QAKEESSSPS RRSVGRPPKK AAAEAANAVA SPKRARESGG KQEASRRPKK 720 RSRR

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MKGGAAAAAD TPSFNNNDNN ITTTSDQTTT STSSWGTWEE LLLACAVKRH GVHDWDTVAM  60
ELQAKTSLPP LLTTASNCNL KYLDLRRRFH SRQQNDDVPP DVDDVHHDPH NNNTTNIPWL  120
DDLRKLRVAQ LRQELHGYDV SIVSLQLKVK RLEEEREDSF KDDDPKPDLE EQQQQDSNRH  180
RSENDKTVRG KPDGSKPDHE NQSVNGSNST CSKNLDHDNK PGPGDRALSE PGPLSAGSDE  240
PSKKTGSGQS DSDSDKGSSE TVAKKRRVRG RQGKGGGDSA GELRESSEAQ SSVSLTKKKN  300
GKRHRRMEVP EQQQQHNNED VSLVKSEPLI EVLQLIRAHE HGSLFERRLS AQESDKYKSI  360
VQQHVDLETI QSKLRKDSYS SCSLSFYRDL LLLFNNAVVF FPKSSLHSKT AHQLRRLVLN  420
EMKKKNLITR PNHDPAPEPS DSVVPAPATS QQPKRPDQLE RSDSLLSKQK SSTAPIIVCR  480
KRSSISSKPS AAAPSFGQTL KGDDNKKAAA FDLKSSIKNS KASSDNHAAA QKHGGSVVLK  540
SAAAAKAKDN PVITGTRGSR RTSTSIAHHE NNTSASKKKQ SASPASLKAE TPKANKNGKM  600
EAAGSDKKRS AAADFLKRIK RNSPADTLKR GGTGTGTSSR SGGEQKRRGG IGKADKVKER  660
VLRQSVNKKK QAKEESSSPS RRSVGRPPKK AAAEAANAVA SPKRARESGG KQEASRRPKK  720
RSRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	302	KKRRVRGRQGKGGGDSAGELRESSEAQSSVSLTKKKNGK
2	716	722	RRPKKRS
3	716	724	RRPKKRSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	1e-73	MYB_related family protein