PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023579.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HRT-like

Protein Properties

Length: 377aa MW: 41807.5 Da PI: 10.1065

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023579.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	60	3.6e-19	271	301	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv +dGsvC++ Pv+gRKRC+eHKGmRi PCP023579.1 271 ICGVVVGDGSVCRTAPVPGRKRCAEHKGMRI 301 8*****************************7 PP
2	HRT-like	54	2.8e-17	343	373	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il dGs+C r+P++gRKRC eHKG+Ri PCP023579.1 343 ICGFILADGSPCGRHPIRGRKRCDEHKGRRI 373 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MVAGNSTVAV SRLKREDCKR TKHDSHFSNW KILVGPSDWE DYSLGKEGAE RYRVHNLPKK 60 ESPGVYELGI SVSRTGLGRE IGKLDPDYIV PVYLGQADNV RTRLQQYGRS GAHLGNGSST 120 GHPTDSVQKE KGPGLFVEIL SRGYPIAYRW APMENKSDAL KTETQLLDTF DYAWNTTING 180 ARRPDDVLRK LKKISSSTTR FANIAEKLLP FSQKKVGIRI ESSKPISTGD KFGAYDDREI 240 HNSPFRVFKL GRSQPRLVSY RSITKENTSI ICGVVVGDGS VCRTAPVPGR KRCAEHKGMR 300 INGSTRVGIS ISNADSQCRV ISNHDPVELP PVEVPASEIF VPICGFILAD GSPCGRHPIR 360 GRKRCDEHKG RRIHKGD

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MVAGNSTVAV SRLKREDCKR TKHDSHFSNW KILVGPSDWE DYSLGKEGAE RYRVHNLPKK  60
ESPGVYELGI SVSRTGLGRE IGKLDPDYIV PVYLGQADNV RTRLQQYGRS GAHLGNGSST  120
GHPTDSVQKE KGPGLFVEIL SRGYPIAYRW APMENKSDAL KTETQLLDTF DYAWNTTING  180
ARRPDDVLRK LKKISSSTTR FANIAEKLLP FSQKKVGIRI ESSKPISTGD KFGAYDDREI  240
HNSPFRVFKL GRSQPRLVSY RSITKENTSI ICGVVVGDGS VCRTAPVPGR KRCAEHKGMR  300
INGSTRVGIS ISNADSQCRV ISNHDPVELP PVEVPASEIF VPICGFILAD GSPCGRHPIR  360
GRKRCDEHKG RRIHKGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	5e-94	HRT-like family protein