PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP023637.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family YABBY
Protein Properties Length: 232aa    MW: 26074.6 Da    PI: 7.8832
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP023637.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2412.4e-74201952170
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee........lleelkveeenlksnvekees 91 
                  ++ s+++q+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhC++l+svn++    ll+  ++ ++   ++        llee +++ +n+ +n++   +
  PCP023637.1  20 HLLSATDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCSNLISVNMRAL--LLPPANNNNQLHLPHpffstphnLLEEIRNTPSNTMMNHQPCYT 115
                  56789*****************************************776554..44444443444555557775666777777777766666665555 PP

        YABBY  92 astsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  +++ ++      ++ +e+p++p  v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl
  PCP023637.1 116 NESIMPIRGEGFDHLQEIPKPPAvVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 195
                  5555555555899*******99989*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MSSAAASSTV FNSQDQQHHH LLSATDQLCY VHCNFCDTVL AVSVPCSSLF KTVTVRCGHC  60
SNLISVNMRA LLLPPANNNN QLHLPHPFFS TPHNLLEEIR NTPSNTMMNH QPCYTNESIM  120
PIRGEGFDHL QEIPKPPAVV NRPPEKRQRV PSAYNRFIKE EIQRIKAGNP DISHREAFSA  180
AAKNWAHFPH IHFGLMPDQP VKKTNMRQQE GDDMLVKDGF FNTPANVGVS PY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-83YABBY family protein