PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023681.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 228aa MW: 26254.6 Da PI: 10.1188

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023681.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.7	2.3e-31	24	73	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ PCP023681.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 73 79***********************************************8 PP
2	K-box	78.7	1.5e-26	92	184	4	96
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++g s++ea+++ +qqe++kL+++i+++q+++Rh+lGe+L++L++keL++Le +Lek++++iRskK+ l + + l+ k e ++e+++ ++ PCP023681.1 92 TDGGSVSEANTQFYQQEASKLRRQIREIQNSNRHILGESLSTLKVKELKNLEGRLEKGISRIRSKKETELQHHNNFLRAKIAESEREQQQQQT 184 566779**************************************************************************9999999887655 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MEFPNQAPES STQKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSTRGRLY EYANNSVRAT IDRYKKACAD STDGGSVSEA NTQFYQQEAS KLRRQIREIQ 120 NSNRHILGES LSTLKVKELK NLEGRLEKGI SRIRSKKETE LQHHNNFLRA KIAESEREQQ 180 QQQTHMMPGT SYDPSMPSNS YDRNFFPVIL ESNNNHYPRQ GQTALQLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.1	1e-106	MIKC_MADS family protein